Plant Breeding Reviews, Volume 45

Name: Plant Breeding Reviews, Volume 45
Brand: Wiley
Price: 206.99 EUR
Availability: OnlineOnly

Irwin Goldman(Herausgeber*in)

Wiley (Verlag)

1. Auflage

Erschienen am 18. Oktober 2021

464 Seiten

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Inhalt

Cover
Title Page
Copyright Page
Contents
Contributors
Chapter 1 Antoine: Slave, Creole Gardener, and Expert Grafter of Pecan Trees
I. BACKGROUND
II. WORK AND RECOGNITION OF 'CENTENNIAL' PECAN
III. SIGNIFICANCE
LITERATURE CITED
Chapter 2 Hazelnut Breeding
Abbreviations
I . Introduction
II. Economic Importance, Producing Countries, and Markets
III. Taxonomy of the Genus Corylus
IV. Genetic Resource Collection, Characterization and Preservation
A. World Germplasm Collections
B. Germplasm Preservation
V. Major Limitations, Needs, and Breeding Objectives
VI. History of Genetic Improvement
A. Germany and England
B. Former Soviet Union
C. United States of America
D. Canada
VII. Breeding Programs Since 1960
A. Italy
B. France
C. Romania
D. Turkey
E. United States of America
F. China
G. Korea
VIII. Floral Biology and Breeding Procedures
A. General Overview
B. Floral Biology, Emasculation, and Protection of Female Parents, Pollen Collection, and Storage
C. Seed Management, Germination, and Seedling Growth in the Greenhouse
D. Field Planting
E. Evaluation and Selection
F. Increase of Promising Selections for Release
G. Legal Protection
IX. Breeding for Specific Traits
A. Nut Size
B. Kernel Percentage
C. Nut Shape
D. Attractiveness of Nuts
E. Kernel Fiber and Attractiveness
F. Ease of Pellicle Removal
G. Flavor
H. Kernel Defects
I. Nuts Per Cluster
J. Husk Length and Type
K. Nut Maturity
L. Precocity
M. Yield and Yield Efficiency
N. Pest Resistance
O. Disease Resistance
P. Climatic Adaptation
X. Clonal Selection
XI. Rootstock Improvement
A. General Overview
B. Corylus colurna as a Rootstock
C . Clonal Rootstocks 'Dundee' and 'Newberg'
D. Corylus avellana Rootstocks
E. Grafting Methods
F. Rootstock Trends
XII. Interspecific Hybridization
XIII. MOLECULAR MARKERS, GENOME SEQUENCES, TRANSCRITOME SEQUENCES AND GENETIC ENGINEERING
A. General Overview
B. Molecular Breeding and Linkage Mapping
C. Genome Sequences and Marker Development
D. Genomic Selection
E. Transcriptome Sequences and Functional Genomics Studies
F. Genetic Engineering and Gene Editing
XIV. Conclusions and Prospects
LITERATURE CITED
Chapter 3 Rewiring Network Plasticity to Improve Crops
ABBREVIATIONS
I. CROP IDEOTYPE DESIGN USING GENE NETWORKS
A. Gene Network Analysis for Breeding
B. Linking Genes to Traits with Transcriptional Networks
C. Networks as Traits
II. LEVERAGING NETWORK PLASTICITY TO IMPROVE CROPS
A. Gene Network Plasticity
B. Regulatory Networks Undergo Rewiring in Response to Environmental Cues
III. MULTISCALE MODELING TO SCALE UP GENE NETWORK PREDICTIONS
IV. CONCLUDING REMARKS AND FUTURE DIRECTIONS
ACKNOWLEDGMENTS
LITERATURE CITED
Chapter 4 Accelerating Crop Domestication in the Era of Gene Editing
ABBREVIATIONS
I. INTRODUCTION
II. MOLECULAR BIOLOGY IN DOMESTICATING AND IMPROVING NOVEL CROPS
A. Gene Editing Using the CRISPR-Cas System
B. Using CRISPR-Cas in Plants
C. Plant Genome Domestication and Breeding Using the CRISPR-Cas System
D. Transgene-free Generation of Edited Plants via the CRISPR-Cas System
E. Engineered Variants of the CRISPR-Cas System
III. BRINGING IN GENES FROM THE WILD INTO DOMESTICATED CROPS
IV. GOING INTO THE UNKNOWN: CAN WE REDOMESTICATE IN A MORE SPECIFIC WAY TO CREATE BETTER CROPS?
V. DO CROP MODELS OFFER OPPORTUNITIES FOR ASSISTING IN DE NOVO DOMESTICATION OF WILD SPECIES?
VI. CAN WE REVIVE LOST DOMESTICATES AND HOW WOULD WE BREED THESE?
VII. CAN MACHINE LEARNING BE USED TO DETECT DOMESTICATION LOCI?
VIII. CONCLUSION AND FUTURE DIRECTIONS
ACKNOWLEDGMENTS
LITERATURE CITED
Chapter 5 Regional and Global Inter-Connectivity Among Common Bean Breeding Programs
I. WHO MAKES BEAN VARIETIES? BREEDING AT VARIOUS SCALES
II. INSTITUTIONAL CONTEXT OF BEAN BREEDING
i. National and Subnational
ii. Networks and Academia
iii. International
iv. Interrelationships Between Entities
III. AGENDA SETTING
IV. PROJECTS VERSUS NETWORKS
V. NEW CONCEPT OF GENOTYPE × ENVIRONMENT × INSTITUTION (G × E × I)
VI. CONTEXT-MECHANISM-OUTCOME FRAMEWORK
VII. CONCLUSION AND FUTURE PROSPECTS
LITERATURE CITED
Chapter 6 The Plant Sciences Symposia Series: A Model for Private Sector Support for Graduate Education
ABBREVIATIONS
I. INTRODUCTION
II. BACKGROUND AND HISTORY
III. OBJECTIVES AND IMPACT
A. Technical Enrichment
B. Interpersonal Skills Development
C. Student Leadership in Response to a Global Pandemic
D. Networking and Career Exploration
IV. CONCLUSIONS
ACKNOWLEDGMENTS
LITERATURE CITED
Chapter 7 Ideas in Genomic Selection with the Potential to Transform Plant Molecular Breeding: A Review
ABBREVIATIONS
I. INTRODUCTION
II. BLUP ALPHABET
III. BAYESIAN ALPHABET
IV. MACHINE LEARNING
A. Principles of Supervised and Deep Learning Methods
B. Application of Supervised Machine Learning in Genomic Prediction
C. Application of Deep Learning in Genomic Prediction
D. Challenges and Opportunities for Future ML Applications in Breeding Programs
V. GWAS-ASSISTED GENOMIC SELECTION
A. Various Approaches to Incorporate Validated Mutations
B. Mixed Results for the Incorporation of Associated Markers
VI. HYBRID BREEDING
A. Factors Affecting Hybrid Prediction Accuracy
B. Heterosis Decomposition
C. Modeling Heterosis
VII. MULTIPLE TRAITS
A. Multi-trait Genomic Selection Models
B. Multi-trait GS Applications in Plant Breeding
VIII. LONG-TERM SELECTION
A. Upweighting Rare Favorable Alleles
B. Genomic Optimal Contribution Selection
C. Selection Based on Potential Progeny
D. Marker Densities and Prediction Models
E. Design of Breeding Populations
IX. ASSESSMENT OF PREDICTION ACCURACY
X. GS-TRANSFORMED PLANT BREEDING
XI. FUTURE PROSPECTS
FUNDING
ACKNOWLEDGMENTS
LITERATURE CITED
Chapter 8 Genetic Revelations of a New Paradigm of Plant Domestication as a Landscape Level Process
ABBREVIATIONS
I. INTRODUCTION
II. A DEEP PLEISTOCENE ONSET OF SELECTION
III. MODES AND LIMITS OF SELECTION IN DOMESTICATION
A. Intentionality, Unconsciousness, and Selective Breeding
B. Environmental Models of Selection and Associated Costs
C. Complex Traits and Shifting Stabilizing Selection
D. Competitive Selection Explains Seed Size Increase
E. Controversy of the Domestication Bottleneck
IV. THE COMPLEX EMERGENCE OF DOMESTICATES
V. LANDSCAPE LEVEL ORIGINS: A NEW PARADIGM
LITERATURE CITED
Chapter 9 Breeding for Acylsugar-Mediated Control of Insects and Insect-Transmitted Virus in Tomato
ABBREVIATIONS
I. INTRODUCTION
A. Issues Regarding Control of Insect and Insect-Transmitted Virus
B. Goals of This Review
II. POTENTIAL FOR PLANT-BASED PEST RESISTANCE
A. Concepts in Plant-Based Insect Resistance
B. Background on Acylsugars
III. WORK COMPLETED BEFORE THE START OF THE ACYLSUGAR BREEDING PROGRAM
IV. PHASE 1: ACYLSUGAR BREEDING PROGRAM AND SUPPORTING WORK
A. Phase 1 Background
B. Phase 1 Breeding and Proof of Breeding Concept
C. Phase 1 Supporting Work: Acylsugar Impact on Range of Insects
D. Phase 1 QTL Supporting Work: QTL Associated with Acylsugar Level or Chemistry
E. Using Hybrids of Acylsugar Lines and Mono-Introgression Lines to Test Impacts of Additional Introgressions on Acylsugar Production
F. Preliminary Trials Demonstrate Reduced Incidence of Whitefly-Transmitted Viruses in Acylsugar-Producing Hybrid
V. PHASE 2: ACYLSUGAR BREEDING PROGRAM AND SUPPORTING WORK
A. Phase 2 Background
B. Phase 2 Breeding
C. Phase 2 Supporting Work: Trials Using Second-Generation Lines Bred in Phase 2
D. Phase 2 Breeding Work: Tomato Lines with an Additional QTL that Increases Acylsugar Level in CU071026
VI. PHASE 3 ACYLSUGAR BREEDING PROGRAM AND SUPPORTING WORK
A. Phase 3 Background
B. Phase 3 Breeding to Eliminate the Block in Fruit and Seed Production
C. Phase 3 Allied Supporting Research: Impact of Acylsugar Chemistry on Control of Insects
D. Phase 3 Analysis to Detect QTL Affecting Acylsugar Chemistry
E. Phase 3 Breeding for Acylsugar Diversity Based Using Acylsugar QTL Identified
F. Phase 3 Allied Work: Acylsugar Biosynthetic Genes of S. pennellii and Their Impact in Acylsugar Tomato Breeding Lines
G. Phase 3 Supporting Research: Trials of Acylsugar-Producing Plants for Action Against Insects and/or Transmitted Virus
VII. ONGOING WORK: Breeding lines to support creation of commercial tomatoes with insect/virus control
A. Genetic Cost, Pleiotropy, and Linkage Drag
B. Success in Breaking Linkage Drag
VIII. FUTURE DIRECTIONS
ACKNOWLEDGEMENTS
NOTES
LITERATURE CITED
Cumulative Contributor Index
Cumulative Subject Index
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