Quantitative Proteomics by Mass Spectrometry

Increased Depth and Breadth of Plasma Protein Quantitation via Two Dimensional Liquid Chromatography/Multiple Reaction Monitoring-Mass Spectrometry with Labeled Peptide Standards.- Quantitative Analysis of the Wirt5-Regulated Lysine Succinylation Proteome in Mammalian Cells.- Determining the Composition and Stability of Protein Complexes Using an Integrated Label-Free and Stable Isotope Labeling Strategy.- Label-Free Quantitation for Clinical Proteomics.- Proteogenomic Methods to Improve Genome Annotation.- Mass Spectrometry-Based Quantitative O-GlcNAcomic Analysis.- Isolating and Quantifying Plasma HDL Proteins by Sequential Density Gradient Ultracentrifugation and Targeted Proteomics.- A Method for Label-Free Differential Top-Down Proteomics.- Multiplexed Immunoaffinity Enrichment of Peptides with Anti-Peptide Antibodies and Quantification by Stable Isotope Dilution Multiple Reaction Monitoring Mass Spectrometry.- High Throughput Quantitative Proteomics Enabled by Mass Defect-Based 12-Plex DiLeu Isobaric Tags.- Isotopic N, N-Dimethyl Leucine (iDiLeu) for Absolute Quantification of Peptides Using a Standard Curve Approach.- Selecting Optimal Peptides for Targeted Proteomic Experiments in Human Plasma Using In Vitro Synthesized Proteins as Analytical Standards.- Using the CPTAC Assay Portal to Identify and Implement Highly Characterized Targeted Proteomics Assays.- Large-Scale and Deep Quantitative Proteome Profiling Using Isobaric Lableing Coupled with Two-Dimensional LC-MS/MS.- Multiple and Selective Reaction Monitoring Using Triple Quadrupole Mass Spectrometer: Pre-Clinical Large Cohort Analysis.- Methods for SWATHT: Data Independent Acquisition on TripleTOF Mass Spectrometers.- Measurement of Phosphorylated Peptides with Absolute Quantification.- Proteomic Analysis of Protein Turnover by Metabolic Whole Rodent Pulse-Chase Isotopic Labeling and Shotgun Mass Spectrometry Analysis.