The Microbiome in Rheumatic Diseases and Infection

Part I: The Human Microbiome.- Overview of the Human Microbiome.- Methods in Microbiome Studies: Collection.- Methods in Microbiome Studies: Informatics.- Part II: Immunogenetics of the Host Response to Infection.- Immunodeficiency and Autoimmunity.- Immunology of the Microbiome.- Lessons Learned from Animal Models on the Role of the Microbiome in Autoimmunity.- The Stroma in Chronic Inflammation.- Part III: Infections Agents.- Borrelia Burgdorferi.- Helicobacter Pylori.- Chlamydiae: Chlamydia Trachomatis and C. Pneumonia.- Mollicutes: Mycoplasma Pneumonia.- Role of Infection in Protection from Autoimmunity.- DNA Viruses.- RNA Viruses.- Human Immunodeficiency Virus Infection.- Enteroviruses.- Hepatitis A Virus.- Hepatitis C Virus.- Protozoal Infections.- Helminth Infections.- The Case for Fungi as Triggers for Autoimmunity.- Part IV: The Role of Infectious Agents in Rheumatic Diseases.- RA.- Spondylitis.- JIA.- Psoriasis & PSA.- Inflammatory Bowel Disease.- Reactive Arthritis.- Rheumatic Fever / Post-Streptococcal Glomerunlonephritis.- SLE.- APS.- Sjorgren's Syndrome.- Myositis.- Vasculitis Syndromes.- Cryoglobulinemia.- Behcet's.- Uveitis.- Sarcoidosis.- Autoinflammatory Syndromes.- Miscellaneous.- Part V: Practical Aspects.- Vaccinations in Rheumatology.- Management of Autoimmune Disorders During Infection / Immunodeficiency.- Individual Drugs in Rheumatology and the Risk of Infection.- The Microbiome: Towards Individualized Medicine