Advances in Bioinformatics and Computational Biology

Name: Advances in Bioinformatics and Computational Biology | 6th Brazilian Symposium on Bioinformatics, BSB 2011, Brasília, Brazil, August 10-12, 2011, Proceedings
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6th Brazilian Symposium on Bioinformatics, BSB 2011, Brasília, Brazil, August 10-12, 2011, Proceedings

Osmar Norberto De Souza Guilherme P. Telles Mathew J. Palakal(Herausgeber*in)

Springer (Verlag)

Erschienen am 21. Juli 2011

IX, 83 Seiten

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978-3-642-22825-4 (ISBN)

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Inhalt

Title
Preface
Organization
Table of Contents
Full Papers
MicroRNA or Not MicroRNA?
Introduction
Conflicts of microRNA and snoRNA Annotation
Discussion
Hierarchical Multilabel Protein Function Prediction Using Local Neural Networks
Introduction
Related Work
Proposed Method
Materials and Methods
Experiments and Discussion
Conclusion and Future Works
Identifying Significant Features in HIV Sequence to Predict Patients' Response to Therapies
Introduction
Our Approach
Computational Experiments
Conclusions
Gene Prediction by Multiple Spliced Alignment
Introduction
Spliced Alignment Problem
A Solution to the Spliced Alignment Problem
Multiple Spliced Alignment Problem
Heuristics for the Multiple Spliced Alignment Problem
Test Results
Discussion
A New Algorithm for Sparse Suffix Trees
Introduction
Definitions
The Set of Factors
A Naive Algorithm
Suffix Link
The Algorithm
Conclusion
Analysis and Implementation of Sorting by Transpositions Using Permutation Trees
Introduction
Sorting by Transpositions
1.5-Approximation Algorithms
Implementation
Results
Discussion
Improved Gene Expression Clustering with the Parameter-Free PKNNG Metric
Introduction
An Automatic Non-supervised Rule
Clustering Quality Measure
Scale Factor
Experimental Evaluation
Settings
Results
Concluding Remarks
Efficiently Querying Protein Sequenceswith the Proteinus Index
Introduction
Related Work
Background
Similarity Search in Protein Sequence Databases
The nsP-Index
The Proposed Proteinus Index
Performance Tests
Workbench
Performance Results
Conclusions and Future Work
Extended Abstracts
SciPhy: A Cloud-Based Workflow for Phylogenetic Analysis of Drug Targets in Protozoan Genomes
Introduction
SciPhy: A Phylogenetic-Based Scientific Workflow
SciPhy Workflow Implementation and Execution
Conclusions
References
A Conceptual Model for Transcriptome High-Throughput Sequencing Pipeline
Introduction
Related Work
A Conceptual Model for a Transcriptome Pipeline
Conclusions
A Conceptual Many Tasks Computing Architecture to Execute Molecular Docking Simulations of a Fully-Flexible Receptor Model
Introduction
A Framework to Model Multiple Environments
Conceptual Architecture to Integrate the SW and MTC Environments
Final Considerations
References
kGC: Finding Groups of Homologous Genes across Multiple Genomes
Introduction
The kGC Method
Results and Discussion
Author Index

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