Encyclopedia of Marine Biotechnology

List of Contributors

Preface

Brief Biography of Prof. Se-Kwon Kim

Acknowledgements

Volume I

Section I Algal Biotechnology

1 Algae Biotechnology: Current Status, Potential and Impediments Sunil Kumar Sahu, Vaibhav A. Mantri, Ping Zheng and Nan Yao

2 Algal Carotenoids: Understanding Their Structure, Distribution and Potential Applications in Human Health Ankita Jain and V.L. Sirisha

3 Algae Cosmetics Izabela Michalak, Agnieszka Dmytryk and Katarzyna Chojnacka

4 Algal Drugs: The State of the Research Ozcan Konur

5 Algae Fertilizers L. Tuhy, A. Saeid and K. Chojnacka

6 Bioactive Polysaccharides from Marine Macroalgae Samanta S. Khora and Pagolu Navya

7 Carrageenan and its Enzymatic Extraction Kustiariyah Tarman, Uju Sadi, Joko Santoso and Linawati Hardjito

8 Colloid Producing Seaweeds: Agarophytes, Carrageenophytes and Alginophytes Biodiversity Leonel Pereira

9 Cultivation and Production Techniques of Marine Algae Subhasha Nigam, Surbhi Sinha, Arti Srivastava and Ashutosh Srivastava

10 Ecophysiology of Marine Algae: Factors Regulating Primary Production and Growth in Natural Environments Jesús M. Mercado, Soluna Salles and Dolores Cortés

11 Epigenetic Activation of Animals, Fish, Crustaceans, Mollusks, and Plants by Administration of Dimethylsulfoniopropionate in Green Sea Algae Kenji Nakajima

12 Hydrocolloid Production of Indonesian Seaweeds Maya Puspita, Nur Azmi Ratna Setyawidati and Ratih Pangestuti

13 Marine Invasive Seaweeds of the Iberian Peninsula for Value Added Products Fatemeh Zahmatkesh, Rui Gaspar and Leonel Pereira

14 Marine Microalgae in Food and Health Applications Ratih Pangestuti , Diah Radini Noerdjito, Evi Amelia Siahaan, Serly Sapulete and Se-Kwon Kim

15 Microalgal Efficiency for Wastewater Treatment P.N. Sudha, K. Vijayalakshmi, D. Hemapriya, M. Saranya and Se-Kwon Kim

16 Microalgal Growth and Nutrient Uptake in Heavy Metal Polluted Environments F.M. Santos, A.P. Lopes, V.J.P. Vilar and J.C.M. Pires

17 New Alternative Fertilizers Based on Algae Biomass Loaded with Metal Ions: Concepts and Applications in the Improvement of Soil Quality Laura Bulgariu and Dumitru Bulgariu

18 Dynamic Modeling of Microalgal Growth José P. Losa, Francisca M. Santos, Maria C.M. Alvim-Ferraz, Fernando G. Martins and José C.M. Pires

19 Recent Insights Into Algal Biotechnology: An Update Using Text Mining Tool K. Parkavi, R. Raja, K. Arunkumar, Ana Coelho, S. Hemaiswarya and Isabel S. Carvalho

20 Pharmacology of Marine Macroalgae Kasim Cemal Güven, Burak Coban and Osman Özdemir

21 Porphyran Mikinori Ueno and Tatsuya Oda

22 Potential Health Benefits of Sulfated Polysaccharides from Marine Algae R.M.A.C. Udayangani, G.D.P. Somasiri, Indira Wickramasinghe and Se-Kwon Kim

Section II Biodiversity

23 Analyzing the Diversity of Microbial Communities Residing in Marine Ecosystems Piyush Chandna, Rama Sisodia, Ramesh Chander Kuhad and Naseem A. Gaur

24 Biodiversity Distribution Patterns of Marine Phytoplankton and their Main Threats (Climate Change, Eutrophication and Acidification) Soluna Salles and Jesús M. Mercado

25 Chemical Ecology Driven Bioprospecting of Marine Sponges Aabha Deshpande and Narsinh Thakur

Section III Bioenergy

26 Biomass Production from Marine Microalgae: Introducing a Biorefinery Concept for Nannochloropsis sp. Yefei Liang and Peer M. Schenk

Volume II

27 Harvesting of Bioenergy and Biomaterials from Marine Resources Md Kaisar Ali, Sajjad Husain Mir, M.K. Mohammad Ziaul Hyder and Wenmin Yang

28 Potential Alternative Marine Bio-Resources for Biodiesel Production Nathan Jubilation Chifamba, Mildred Nyamunokora, Kumar Gaurav and Joydeep Dutta

Section IV Biomaterials

29 Alginate Nanostructures: Pharmaceutical Approaches Sougata Jana, Nilofer Jasmin, Kalyan Kumar Sen and Sabyasachi Maiti

30 Alginate Oligosaccharides Mikinori Ueno and Tatsuya Oda

31 Ascophyllan Mikinori Ueno, Takasi Okimura and Tatsuya Oda

32 Biodegradable Nanoparticles for Photodynamic Therapy Mohammadreza Saboktakin

33 Biomaterials for Tissue Engineering - Bioabsorbability/Degradation in Marine Biotechnology Kelvii Wei Guo and Hon Yuen Tam

34 Biomedical Applications of Chitin Nanofibers Kazuo Azuma, Yoshiharu Okamoto and Shinsuke Ifuku

35 Biotechnological Valorization of Marine Collagens: Biomaterials for Health Applications Dario Fassini, Sara M. Oliveira, Tiago H. Silva and Rui L. Reis

36 Chemical Modifications of Chitin and Chitosan Maher Z. Elsabee, Rania E. Morsi and M. Fathy

37 Chitosan as a Universal Drug Delivery Vehicle Partha Pratim Bose and Urmimala Chatterjee

38 Chitosan Based Composites and Their Applications in Tissue Engineering Nauman Rahim Khan, Kifayat Ullah Shah, Asif Nawaz and Tin Wui Wong

39 Marine Collagen and its Biotechnological Applications Marina Pozzolini, Sonia Scarfì and Marco Giovine

40 Chitosan-Antioxidant Conjugates Vivien Nagy and Már Másson

41 Chondroitin Sulfate from Marine Invertebrates: Isolation and Applications Uthayasooriyan Yuvashri, Shankar Kanchana, Arumugam Abirami, Kavitha Naidu, Gunaratna Kuttuva Rajarao and Muthuvel Arumugam

42 Environmental Applications of Chitosan and its Derivatives P. Padmaja and Ronak Bhatt

43 Extracellular Chitin Nanofibers from Marine Diatoms Omar G. Chiriboga, Paul LeDuff and Gregory L. Rorrer

44 Extraction and Purification of Fucoidan from Marine Sources Noelia Flórez-Fernández, Elena M. Balboa and Herminia Domínguez

45 Fish Collagen: Characteristics and Application Yoshihiko Hayashi

46 Fucoidan Oligosaccharides - Bioactive and Therapeutic Potential Magdalena M. Stefaniak-Vidarsson, María Gudjónsdóttir and Olafur E. Sigurjonsson

47 Marine Biomaterials-Based Systems: Delivery of Therapeutics Sougata Jana, Arijit Gandhi and Chandrani Roy

48 Marine Collagen as a Source of Biomaterial Kirti and Samanta S. Khora

49 Marine Algal Polysaccharides and Their Applications Irudayaraj Rajendran

50 Marine Biomaterial Treasure and Biomedical Sciences Gopi Suresh Oggu, Surekha Velidandla, Kranti Kiran Reddy Ella, Jayachandran Venkatesan, Amit Asthana, Se-Kwon Kim and Ira Bhatnagar

51 Marine Polysaccharide-Based Nanomaterials Sudip Mondal, Panchanathan Manivasagan and Junghwan Oh

52 pH-Sensitive Modification of Chitosan as a Gene Carrier among Marine Biomaterials Hu-Lin Jiang, Lei Xing, Tian-Jiao Zhou, Jia-Hui Gong, Yu-Jing He, Wan-Ru Zhuang, Ki-Hyun Cho and Chong-Su Cho

53 Enzymatic Production of Water-Soluble Chitosan and its Development Prospects in Indonesia Yusro Nuri Fawzya, Syamdidi and Hari Eko Irianto

54 3D Printed Marine Biomaterials Composites for Bone Tissue Engineering Seong-Yeong Heo, Gun-Woo Oh and Won-Kyo Jung

55 Recent Advances on Chitosan-Based Materials in Regenerative Medicine P.R. Sivashankari and M. Prabaharan

56 Ulvan in Tissue Engineering P.N. Sudha, T. Gomathi and Se-Kwon Kim

Volume III

Section V Compounds

57 Aeroplysinin-1, A Sponge-Derived Compound with Multi-Target Biological Activity Beatriz Martínez-Poveda, Miguel Ángel Medina and Ana R. Quesada

58 Anti-Angiogenic and Anti-Lymphangiogenic Properties of Toluquinol, a Marine Fungus Metabolite Melissa García-Caballero, Miguel Angel Medina, Agnes Nöel and Ana Rodríguez Quesada

59 Astaxanthin and Fucoxanthin: Promising Marine Xanthophylls with Therapeutic Potential M. Barbosa, P. Valentão and P.B. Andrade

60 Applications of Marine Proteases Sougata Jana, Subhamay Panda, Manik Baral and Subrata Jana

61 Bioactive Proteins and Peptides from Microalgae Julianne Stack, Aurélien V. Le Gouic and Richard J. FitzGerald

62 Characterization of Bioactive Peptide Derived from Fish Mucus Deivasigamani Balaraman, Vasuki Subramanian and Edward Gnana Jothi Georgea

63 Marine Natural Pigments: Bioactivities, Production and Application Yan-Chao Wu, Xiao-Bo Wang and Hui-Jing Li

64 Marine Bioresources as Potential Source for Synthesis of Nanoparticles Vijayalakshmi Ghosh

65 Marine Algal Phlorotannins and their Biological Importance Noel Vinay Thomas, A. Salomy Monica Diyya, Dlzar Dlshad Ghafour and Se-Kwon Kim

66 Neuroprotective Compounds from Marine Microorganisms Shiek S.S.J. Ahmed, K. Pallavi, P.S. Aiswarya, V. Ramakrishnan and R.S. Akram Husain

67 Potential Uses and Medical Management of Neurotoxic Phycotoxins S. Lucía Blanco, Laura P. Rodríguez, Jorge Lago, Juan M. Vieites and Ana G. Cabado

68 Pharmacological Profile of Bromophenols Derived from Marine Organisms Ming Liu, Huanli Xu and Xiukun Lin

69 Photoaging and Anti-Photoaging Activity of Compounds Derived From Marine Origin V. Ramakrishnan, P.S. Aiswarya, K. Pallavi, R.S. Akram Husain and Shiek S.S.J. Ahmed

70 Structure and Source of Marine Natural Products Gunasekaran Bharath, Mathiyazhagan Jayasindu and K.M. Gothandam

71 Violacein and Prodiginines from Marine Bacteria: The Molecular Basis of their Bioactivities and Biotechnology for their Production Keiichi Enomoto

Section VI Extremophiles

72 Extremozymes and Extremoproteins in Biosensor Applications Namasivayam Vasudevan and Annamalai Jayshree

73 Chitosan as Anticancer Compound and Nanoparticulate Matrix for Cancer Therapeutics Asif Nawaz and Tin Wui Wong

74 Marine Extremophiles: Adaptations and Biotechnological Applications Prashakha J. Shukla, Vaibhav D. Bhatt, Jayaraman Suriya and Chandrashekar Mootapally

Section VII Genomics

75 Algal Genomics: The State of the Research Ozcan Konur

76 Advancements in Bioinformatics and Role in Marine Genomics and Metagenomics Neelam M. Nathani, Ananya Mitra, Chandrashekar Mootapally and Ramesh K. Kothari

77 Current Advances in Biotechnology of Marine Microalgae Chun Wan, Bailing Chen, Xinqing Zhao and Fengwu Bai

78 Expanding Metabolomics Applications to Address Issues in Marine Ecology and Natural Products Chemistry Sara E. Ali and Mohamed A. Farag

79 Fish Genomics Yu Huang, Chao Bian, Yulu Liu, Xinxin You, Hui Yu, Yunhai Yi, Bing Xie and Qiong Shi

80 Genomic and Proteomics in Pharmaceutical Products Development and Biological Applications of Marine Derivatives Abdul Bakrudeen Ali Ahmed, Mohaddeseh Adel, Pegah Karimi, Taha Mahmoudi, Reza Farzinebrahimi and Ram Arun Kumar

81 "OMICS" Techniques - Applications and Future Perspectives Aathira Maikkara, Samiha Tabassum Ghori, Vishaalini Kamali and Ayyavu Mahesh

82 Role of Metagenomics in Exploring Marine Microbiomes: Current Status and Implications Chandrashekar Mootapally, Neelam Mustakali Nathani, Solly Solomon, Bharathiraja Subramanian and Indra Ramjibhai Gadhvi

83 Recent Advances in the Transcriptomics of Seaweeds Bhakti Tanna and Avinash Mishra

84 Transcriptomics in Aquaculture D. Inbakandan

Section VIII Microbiology

85 Degradation and Modification of Alginate by Enzymes in Marine Organisms Akira Inoue

86 Actinobacteria in Marine Environments: From Terrigenous Origin to Adapted Functional Diversity D.I. Kurtb¿ke, T. Okazaki and G. Vobis

87 Biotransformation of Flavonoids by Terrestrial and Marine Microorganisms Iara Lisboa de Matos, Marcia Nitschke, Luís Joaquim Pina da Fonseca and André Luiz Meleiro Porto

Volume IV

88 Culture-independent Approach-based Mangrove Microbial Ecology Studies Dinesh Sanka Loganathachetti, Anbu Poosakkannu and Sundararaman Muthuraman

89 Challenges and Triumphs to Genomics-based Microbial Agarase Enzyme Innovations and Applications from Marine Ecosystems Pallaval Veera Bramhachari, G. Mohana Sheela and A.M.V.N. Prathyusha

90 Desert Actinobacteria: New Promising Source for Natural Product Search and Discovery Krishnasamy Nithya, Chinnasamy Muthukumar, Dhanasekaran Dharumadurai, Arunachalam Chinnathambi, Sulaiman Ali Alharbi, Naiyf S. Alharbi and Nooruddin Thajuddin

91 Halophilic Bacteria in the Food Industry Ashokkumar Sekar and Keun Kim

92 Influence of Pretreatment Time in the Sugarcane Bagasse Saccharification by Cellulase Complex Produced by Marine Fungi Darlisson A. Santos, Marcelo M. Oliveira, Antonio Aprigio S. Curvelo, Luis P. Fonseca and André Luiz M. Porto

93 Marine Actinobacteria as a Source for Emerging Biopharmaceuticals Kamala, K., P. Sivaperumal, S. Manjunath Kamath, W. Richard Thilagaraj and R. Rajaram

94 Marine Bacteria as a Rich Source of Glycosaminoglycan-degrading Enzymes Qingdong Zhang, Lin Wei, Jingwen Guan, Kazuyuki Sugahara and Fuchuan Li

95 Marine Cyanobacteria Amr Badary and Koji Sode

96 Marine Fungi as a Source of Natural Products Kustiariyah Tarman

97 Marine Cyanobacteria: Applications in Food, Energy, and Pharmaceuticals Phuong Uyen Le, Thanh Sang Vo and Se-Kwon Kim

98 Medicinal Drug-related Bioactive Agents from Marine Fungi Kandasamy Saravanakumar, Narayanasamy Rajendren, Kandasamy Kathiresan and Myeong-Hyeon Wang

99 Mangrove Diversity Assessment by Molecular Markers: An Overview M. Karuppaiya, S. Balamurugan, K. Sivakumar and K. Kathiresan

100 Bioremediation Process by Marine Microorganisms K. Mohanrasu, R. Guru Raj Rao, Rathinam Raja and A. Arun

101 Marine Photosynthetic Microorganisms: Valuable Compound Production and Bioenergy Applications Shailendra P. Singh and Rajeshwar P. Sinha

102 Microbial Fermentation for Algal Fertilizer Production Mingpeng Wang, Peisheng Yan and Xuejiang Wang

103 Non-ribosomal Peptides from Marine-derived Fungi: Chemistry, Bioactivity, and Biosynthesis Fayrouz El Maddah, Gabriele M. König and Katja M. Fisch

104 Production of Industrial Important Enzymes from Marine Isolates Ashokkumar Sekar and Keun Kim

105 The Underexploited Bacterial Symbionts of Marine Invertebrates as the Potential Sources of Marine Carotenoids Ocky Karna Radjasa and Agus Sabdono

106 Tropical Marine Cyanobacterium Lyngbya sordida Producing Toxic Octacosa-1,27-diene Induces Coagulative Hepatic Necrosis and Progressive Glomerulonephritis in Mus musculus M. Nagarajan, V. Maruthanayagam, K. Meenakshi Sundaram and M. Sundararaman

107 Nanogram and Nanomolar Active Marine Antiplasmodial Antibiotics Nagarajan Manivel, Sanjeev Kumar Shukla and Sundararaman Muthuraman

108 Polyketide Synthase from Marine Sponge Siswa Setyahadi

109 Perspectives for Novel Enzyme Discovery from Marine Environments through Genome Mining and Metagenomics Pallaval Veera Bramhachari, G. Mohana Sheela and Thadikamala Satish

Section IX Pharmaceutical Development

110 Antibacterial Activity of Seaweed-ZnO Composites Dr. S. Thambidurai and Dr. R. Pandimurugan

111 Antifungal and Antibacterial Agents from Marine Organisms Rajan Rajabalaya and Sheba Rani David

112 Trends in Development of Marine-based Anti-inflammatory Pharmaceuticals D. Buddika O. Malaweera and Niluni M. Wijesundara

113 Ascidians: A Potential Resource for Pharmaceutical Development Velusamy Arumugam, Manigandan Venkatesan, Karthik Ramachandran, Umamaheswari Sundaresan and Saravanan Ramachandran

114 Chitosan and its Derivatives as Potential Biomaterials Dai-Hung Ngo, Thanh-Sang Vo, Dai-Nghiep Ngo, Nguyen Thi Lien Thuong and Se-Kwon Kim

115 Cytotoxic and Antitumor Compounds from Marine Invertebrates Harika Atmaca Ilhan and Çisil Çamli Pulat

116 Marine-derived Potential Anti-inflammatory Agents Maushmi S. Kumar and Vandana B. Patravale

117 Marine-derived Pharmaceuticals for Oncotherapy: Clinical Trial and FDA-approved Compounds Rashmi H. Prabhu and Vandana B. Patravale

118 Marine-origin Polysaccharides for Tissue Engineering and Regenerative Medicine: Chitosan and Fucoidan as Illustrative Examples Lara L. Reys, Simone S. Silva, Catarina Oliveira, Rita Lopez-Cebral, Nuno M. Neves, Albino Martins, Joaquim M. Oliveira, Tiago H. Silva and Rui L. Reis

119 Novel Marine Sources of Nutraceuticals and Functional Foods: The Marine Crustacean Krill, Macro- and Microalgae Janet Tou, Christopher Oldaker and Yvonne V. Yuan

Volume V

120 Marine Algal-derived Pharmaceuticals: Potential Anticancer Agents Sanith Cheriyamundath and V.L. Sirisha

121 Marine Source-derived Anti-HIV Therapeutics Amit G. Mirani, Tanvi K. Shah and Vandana B. Patravale

122 Marine Biopharmaceuticals - A Retrospective of Molecular Mechanisms Samiha Tabassum Ghori, Vishaalini Kamali Raja, Uthira Muralitharan, Aathira Maikkara and Ayyavu Mahesh

123 Chitosan and Trimethyl Chitosan (TMC) as Drug Absorption Enhancers: Moving Forward toward Clinical Acceptance Berglind Eva Benediktsdóttir

Section X Seafood Science

124 Application of Local Proteases to Produce Fish Protein Hydrolysate (FPH) in Indonesia Yusro Nuri Fawzya and Ekowati Chasanah

125 Allergic Risks Associated with Seafood Samanta S. Khora

126 Applications of Biotechnology in Seafood Production and Processing C.S. Ranadheera, P.H.P. Prasanna and J.K. Vidanarachchi

127 Dielectric Properties of Selected Seafood and their Products L.T. Nguyen, I. Ahmad and N.Y. Jayanath

128 Health Risk Assessment for Radionuclide Contamination in Seafood P. Sivaperumal, P. Kumar, K. Kamala, Ajit. A. Ambekar, K. Ponnusamy, R. Rajaram and A.K. Pal

129 Indonesian Traditional Fermented Fish Ikan Peda: Processing, Quality, and Utilization Improvements Giyatmi and Hari Eko Irianto,

130 Improvements in Seafood Products through Recent Technological Advancements in Seafood Processing Upani Pinnaduwa, Eresha Mendis and Se-Kwon Kim

131 Seafood in the Human Diet for Better Nutrition and Health Chathurika Jayasekara, Eresha Mendis and Se-Kwon Kim,

132 Seafood By-products: A New Way from Waste to High Added Value in Pharmaceuticals and Cosmetics Ngo Dang Nghia

133 Seafood as Source of Protein-based Functional Foods Rahmi Nurdiani, Asep Awaludin Prihanto and Muhamad Firdaus

134 Stress in Fish and Application of Carotenoid for Aquafeed as an Antistress Supplement Toshiki Nakano

135 Recovery of Bioactive Components from Seafood By-products toward Zero-waste Processing Trang Si Trung, Nguyen Van Hoa, Pham Thi Dan Phuong, Nguyen Cong Minh, Nguyen Thi Hong Mai, Hoang Ngoc Cuong, Phan Thanh Loc and Willem Frans Stevens

136 Traditional and Novel Seafood Processing Techniques Targeting Human Health Promotion Harshani Nadeeshani, Niranjan Rajapakse and Se-Kwon Kim

137 The Potential of Developing Additives from Marine Bioresources for the Food Industry Shachini Karunarathne, Eresha Mendis and Se-Kwon Kim

138 Applications of Flow Cytometry in Marine Biotechnology Teresa Lopes da Silva and Alberto Reis

Section XI Tools for Marine Biotechnology

139 Bioremediation of Marine Effluents and Environments J. Paniagua-Michel

140 Bioremediation: A Promising Xenobiotics Cleanup Technique Thandapani Gomathi, M. Saranya, E. Radha, K. Vijayalakshmi, P. Supriya Prasad and P.N. Sudha

141 Future of Mariculture with the Advent of Modern Biotechnology Tools Dr. T. Charles John Bhaskar

142 In Silico Techniques Used in Marine Biology Research: An Overview Jitendra Narayan and Rahul Agarwal

143 Innovative Alternative Technology for Fucoxanthin Recovery Evi Amelia Siahaan and Byung Soo Chun

144 Marine Microorganisms: Tools for Radionuclide Bioremediation P. Sivaperumal, K. Kamala, S. Manjunath Kamath, P. Kumar, R. Rajaram and W. Richard Thilagaraj

145 Transgenic Fish Technology: Principle and Application Thomas T. Chen and Maria J. Chen

146 Reproductive Processes of Marine Animals as Biomarker for Environmental Stress Impact Alessandra Gallo and Elisabetta Tosti

Index