Schweitzer Fachinformationen
Wenn es um professionelles Wissen geht, ist Schweitzer Fachinformationen wegweisend. Kunden aus Recht und Beratung sowie Unternehmen, öffentliche Verwaltungen und Bibliotheken erhalten komplette Lösungen zum Beschaffen, Verwalten und Nutzen von digitalen und gedruckten Medien.
List of Contributors xi
Preface xv
1 Explicitly Correlated Local Electron Correlation Methods 1 Hans-Joachim Werner, Christoph Koppl, Qianli Ma, and Max Schwilk
1.1 Introduction 1
1.2 Benchmark Systems 3
1.3 Orbital-Invariant MP2 Theory 6
1.4 Principles of Local Correlation 9
1.5 Orbital Localization 10
1.6 Local Virtual Orbitals 12
1.7 Choice of Domains 24
1.8 Approximations for Distant Pairs 26
1.9 Local Coupled-Cluster Methods (LCCSD) 33
1.10 Triple Excitations 41
1.11 Local Explicitly Correlated Methods 41
1.12 Technical Aspects 53
1.13 Comparison of Local Correlation and Fragment Methods 57
1.14 Summary 60
Appendix A: The LCCSD Equations 63
Appendix B: Derivation of the Interaction Matrices 65
References 67
2 Density and Potential Functional Embedding: Theory and Practice 81 Kuang Yu, Caroline M. Krauter, Johannes M. Dieterich, and Emily A. Carter
2.1 Introduction 81
2.2 Theoretical Background 82
2.3 Density Functional Embedding Theory 84
2.4 Potential Functional Embedding Theory 101
2.5 Summary and Outlook 109
Acknowledgments 111
References 111
3 Modeling and Visualization for the Fragment Molecular Orbital Method with the Graphical User Interface FU, and Analyses of Protein-Ligand Binding 119 Dmitri G. Fedorov and Kazuo Kitaura
3.1 Introduction 119
3.2 Overview of FMO 120
3.3 Methodology 120
3.4 GUI Development 128
3.5 Conclusions 136 Acknowledgments 137 References 137
4 Molecules-in-Molecules Fragment-Based Method for the Accurate Evaluation of Vibrational and Chiroptical Spectra for Large Molecules 141 K. V. Jovan Jose and Krishnan Raghavachari
4.1 Introduction 141
4.2 Computational Methods and Theory 142
4.3 Results and Discussion 146
4.4 Summary 157
4.5 Conclusions 158 Acknowledgments 159 References 159
5 E¿ective Fragment Molecular Orbital Method 165 Casper Steinmann and Jan H. Jensen
5.1 Introduction 165
5.2 E¿ective Fragment Molecular Orbital Method 168
5.3 Summary and Future Developments 180
References 180
6 E¿ective Fragment Potential Method: Past, Present, and Future 183 Lyudmila V. Slipchenko and Pradeep K. Gurunathan
6.1 Overview of the EFP Method 183
6.2 Milestones in the Development of the EFP Method 185
6.3 Present: Chemistry at Interfaces and Photobiology 192
6.4 Future Directions and Outlook 202
References 203
7 Nucleation Using the E¿ective Fragment Potential and Two-Level Parallelism 209 Ajitha Devarajan, Alexander Gaenko, Mark S. Gordon, and Theresa L. Windus
7.1 Introduction 209
7.2 Methods 211
7.3 Results 217
7.4 Conclusions 223
Acknowledgments 223
References 224
8 Five Years of Density Matrix Embedding Theory 227 Sebastian Wouters, Carlos A. Jime¿nez-Hoyos, and Garnet K.L. Chan
8.1 Quantum Entanglement 227
8.2 Density Matrix Embedding Theory 228
8.3 Bath Orbitals from a Slater Determinant 230
8.4 The Embedding Hamiltonian 232
8.5 Self-Consistency 234
8.6 Green's Functions 236
8.7 Overview of the Literature 237
8.8 The One-Band Hubbard Model on the Square Lattice 237
8.9 Dissociation of a Linear Hydrogen Chain 240
8.10 Summary 240
Acknowledgments 241
References 241
9 Ab initio Ice, Dry Ice, and Liquid Water 245 So Hirata, Kandis Gilliard, Xiao He, Murat Kec¿eli, Jinjin Li, Michael A. Salim, Olaseni Sode, and Kiyoshi Yagi
9.1 Introduction 245
9.2 Computational Method 247
9.3 Case Studies 256
9.4 Concluding Remarks 284
9.5 Disclaimer 284 Acknowledgments 284 References 285
10 A Linear-Scaling Divide-and-Conquer Quantum Chemical Method for Open-Shell Systems and Excited States 297 Takeshi Yoshikawa and Hiromi Nakai
10.1 Introduction 297
10.2 Theories for the Divide-and-Conquer Method 298
10.3 Assessment of the Divide-and-Conquer Method 307
10.4 Conclusion 318
References 319
11 MFCC-Based Fragmentation Methods for Biomolecules 323 Jinfeng Liu, Tong Zhu, Xiao He, and John Z. H. Zhang
11.1 Introduction 323
11.2 Theory and Applications 324
11.3 Conclusion 345 Acknowledgments 346 References 346
Index 349
Hans-JoachimWerner, Christoph Köppl, Qianli Ma, and Max Schwilk
Institute for Theoretical Chemistry, University of Stuttgart, Germany
Accurate wave function methods for treating the electron correlation problem are indispensable in quantum chemistry. A well-defined hierarchy of such methods exists, and in principle, these methods allow to approach the exact solution of the non-relativistic electronic Schrödinger equation to any desired accuracy. A much simpler alternative is density functional theory (DFT), which is probably most often used in computational chemistry. However, its failures and uncertainties are well known, and there is no way for systematically improving or checking the results other than comparing with experiment or with the results of accurate wave function methods.
Due to the steep scaling of the computational resources (CPU-time, memory, disk space) with the molecular size, conventional wave function methods such as CCSD(T) (coupled-cluster with single and double excitations and a perturbative treatment of triple excitations) can only be applied to rather small molecular systems. For example, the CPU-time of CCSD(T) scales as , where is a measure of the molecular size (e.g., the number of correlated electrons) and even the simplest electron correlation method, MP2 (second-order Møller-Plesset perturbation theory) scales as . This causes a "scaling wall" that cannot be overcome. Even with massive parallelization and using the largest supercomputers, this wall can only be slightly shifted to larger systems. However, it is well known that electron correlation in insulators is a short-range effect. The pair correlation energies decay at long-range with R- 6, where R is the distance between two localized spin orbitals. Therefore, the steep scaling is unphysical. It results mainly from the use of canonical molecular orbitals, which are usually delocalized over larger parts of the molecule.
The scaling problem can be much alleviated by exploiting the short-range character of electron correlation using local orbitals and by introducing local approximations. This was first proposed in the pioneering work of Pulay et al. [1-6], and in the last 20 years enormous progress has been made in developing accurate local correlation methods. There are two different approaches, both of which are based on the use of local orbitals. The traditional one is to treat the whole molecule in one calculation and to apply various approximations that are based on the fast decay of the correlation energy. We will denote such methods "local correlation methods." A large variety of such approaches has been published in the past [7-59].
The second approach is the so-called "fragmentation methods" [60-87], in which the system is split into smaller pieces. These pieces are treated independently, mostly using conventional methods (although the use of local correlation methods is also possible). The total correlation energy of the system is then assembled from the results of the fragment calculations. Various methods differ in the way in which the fragments are chosen and the energy is assembled. A special way of assembling the energy using a many-body expansion is used in the so-called incremental methods [88-96], but these also belong to the group of fragmentation methods. Fragmentation methods will be described in other chapters of this volume and are therefore not the subject of this chapter. However, in Section 1.13, we will comment on the relation of local correlation and fragmentation methods.
Another problem of the CCSD(T) method is the slow convergence of the correlation energy with the basis set size. Very large basis sets are needed to obtain converged results, and this makes conventional high-accuracy electron correlation calculations extremely expensive. This problem is due to the fact that the wave function has a cusp for r12 0, where r12 is the distance between two electrons. The cusp is due to the singularity of the Coulomb operator , and cannot be represented by expanding the wave function in antisymmetrized products of molecular orbitals (Slater determinants). This leads to the very slow convergence of the correlation energy with the size of the basis set, and in particular with the highest angular momentum of the basis functions. This problem can be solved by including terms into the wave function that depend explicitly on the distance r12, and these methods are known as "explicit correlation methods" [97-155].
The combination of explicit correlation methods with local approximations has been particularly successful [140-153]. As will be explained and demonstrated later in this chapter, this does not only drastically reduce the basis set incompleteness errors, but also strongly reduces the errors caused by local approximations. Local correlation methods employ two basic approximations. The first is based on writing the total correlation energy as a sum of pair energies. Each pair describes the correlation of an electron pair (in a spin-orbital formulation), or, more generally, the correlation of the electrons in a pair of occupied local molecular orbitals (LMOs). Depending on the magnitude of the pair energies, it is possible to introduce a hierarchy of "strong," "close," "weak," or "distant" pairs [7,18,31,32]. Different approximations can be introduced for each class, ranging from a full local coupled-cluster (LCCSD) treatment for strong pairs to a non-iterative perturbation correction for distant pairs, which can be evaluated very efficiently using multipole approximations [12, 13]. We will denote such approximations as "pair approximations." The second type of local approximations is the "domain approximation," which is applied to each individual pair. A domain is a subset of local virtual orbitals which is spatially close to the LMO pair under consideration. Asymptotically, the number of orbitals in each pair domain (the "domain sizes") become independent of the molecular size. Also the number of pairs in each class (except for the distant pairs) becomes independent of the molecular size. This leads to linear scaling of the computational effort as a function of molecular size, as has already been demonstrated for LMP2 and up to the LCCSD(T) level of theory more than 25 years ago [12-18].
The critical question is, of course, how quickly the correlation energy as well as relative energies (e.g., reaction energies, activation energies, intermolecular interaction energies, and electronic excitation energies) converge with the domain sizes and how they depend on the pair approximations. The domain sizes which are necessary to reach a certain accuracy (e.g., 99.9% of the canonical correlation energy) depends sensitively on the choice of the virtual orbitals. As is known since the 1960s, fastest convergence is obtained with pair natural orbitals (PNOs) [156], and this has first been fully exploited in the seminal PNO-CI and PNO-CEPA methods of Meyer [157, 158], and somewhat later also by others [159-163]. The problem with this approach is that the PNOs are different for each pair and non-orthogonal between different pairs. This leads to complicated integral transformations and prevented the application of PNO methods to large molecules for a long time. The method was revived by Neese and coworkers in 2009 and taken up also by others (including us) later on [32,33,48-57,146-150]. The problem of evaluating the integrals was overcome by using local density-fitting approximations [22]. Furthermore, the integrals are first computed in a basis of projected atomic orbitals (PAOs), which are common to all pairs, and subsequently transformed to the pair-specific PNO domains [54,146,147,150]. Also, hybrid methods, in which so-called orbital-specific virtuals (OSVs) [164-167] are used at an intermediate stage, have been proposed [53, 146, 147]. Later sections of this chapter will explain these approaches in some detail.
Local approximations have also been developed for multi-reference wave functions [168-176]. The description of these methods is beyond the scope of the current article, but we mention that recently very efficient and accurate PNO-NEVPT2 [175] (N-electron valence state perturbation-theory) and PNO-CASPT2 [176] (complete active space second-order perturbation theory) methods have been described.
In the current article, we will focus on new developments of well-parallelized PNO-LMP2-F12 and PNO-LCCSD-F12 methods recently developed in our laboratory. These methods also have a close relation to the methods of Neese et al. [54-57, 153]. After introducing some benchmark systems, which will be used later on, we will first outline the principles of local correlation and describe the choice of the local occupied and virtual orbitals as well as of the domains. The convergence of the correlation energy as a function of the domain sizes will be demonstrated for various types of virtual orbitals for LMP2. Subsequently, based on these foundations, we will discuss more advanced approximations for distant pairs and close/weak pair approximations used in local coupled...
Dateiformat: ePUBKopierschutz: Adobe-DRM (Digital Rights Management)
Systemvoraussetzungen:
Das Dateiformat ePUB ist sehr gut für Romane und Sachbücher geeignet – also für „fließenden” Text ohne komplexes Layout. Bei E-Readern oder Smartphones passt sich der Zeilen- und Seitenumbruch automatisch den kleinen Displays an. Mit Adobe-DRM wird hier ein „harter” Kopierschutz verwendet. Wenn die notwendigen Voraussetzungen nicht vorliegen, können Sie das E-Book leider nicht öffnen. Daher müssen Sie bereits vor dem Download Ihre Lese-Hardware vorbereiten.Bitte beachten Sie: Wir empfehlen Ihnen unbedingt nach Installation der Lese-Software diese mit Ihrer persönlichen Adobe-ID zu autorisieren!
Weitere Informationen finden Sie in unserer E-Book Hilfe.