A Handbook for DNA-Encoded Chemistry

Preface vii
Acknowledgments ix
Introductory Comments xi
Contributors xxiii
1 Just enough knowledge... 1
Agnieszka Kowalczyk
2 A brief history of the development of combinatorial chemistryand the emerging need for DNA-encoded chemistry 19
Robert A. Goodnow, Jr.
3 A brief history of DNA-encoded chemistry 45
Anthony D. Keefe
4 DN A-Compa tible Chemistry 67
Kin-Chun Luk and Alexander Lee Satz
5 Foundations of a DNA-encoded library (DEL) 99
Alexander Lee Satz
6 EXERCISES IN THE SYNTHESIS OF DNA-ENCODED LIBRARIES 123
Steffen P. Creaser and Raksha A. Acharya
7 the dna tag: A Chemical gene designed for DNA-encodedlibraries 153
Andrew W. Fraley
8 Analytical challenges for DNA-encoded library systems171
George L. Perkins and G. John Langley
9 Informatics: Functionality and architecture for DNA-encodedlibrary production and screening 201
John A. Feinberg and Zhengwei Peng
10 Theoretical considerations of the application of DNA-encodedlibraries to drug discovery 213
Charles Wartchow
11 Begin with the End in Mind: The hit-to-lead process 231
John Proudfoot
12 Enumeration and Visualization of Large Combinatorial ChemicalLibraries 247
Sung-Sau So
13 Screening Large Compound Collections 281
Stephen P. Hale
14 Reported applications of DNA-encoded library chemistry319
Johannes Ottl
15 Dual-Pharmacophore DNA-Encoded Chemical Libraries 349
Jörg Scheuermann and Dario Neri
16 Hit Identification and Hit Follow-up 357
Yixin Zhang
17 Using DNA to Program Chemical Synthesis, Discover NewReactions, and Detect Ligand Binding 377
Lynn M. McGregor and David R. Liu
18 the changing feasibility and economics of chemical diversityexploration with DNA-encoded combinatorial approaches 417
Robert A. Goodnow, Jr.
19 Keeping the promise? An outlook on DNA chemical librarytechnology 427
Samu Melkko and Johannes Ottl
Index 435