Tumor Immunology and Immunotherapy - Integrated Methods Part B

1. A comprehensive approach to gene expression profiling in immune cellsSabrina Carpentier, François Romagné and Eric Vivier2. DIY: Visualizing the immune landscape of tumors using transcriptome and methylome dataSteven F. Gameiro, Farhad Ghasemi, John W. Barrett, James Koropatnick, Anthony C. Nichols, Joe S. Mymryk and Saman Maleki Vareki3. Using epigenetic data to estimate immune composition in admixed samplesAnkur Chakravarthy and Daniel De Carvalho4. Metabolomic approaches to study the tumor microenvironmentGiuseppe Astarita, Suraj Dhungana, Bindesh Shrestha and Evagelia C. Laiakis5. Immunoscore assay for the immune classification of solid tumors: Technical aspects, improvements and clinical perspectivesFlorence Marliot, Lucie Lafontaine and Jérôme Galon6. Transforming growth factor beta (TGF-ß) activity in immune-oncology studiesGabriel Gallo-Oller, Marianna Di Scala, Fernando Aranda and Javier Dotor7. Isolation of DNA from exosomesSheila Spada, Nils Rudqvist and Erik Wennerberg8. Decoding cancer cell death-driven immune cell recruitment: An in vivo method for site-of-vaccination analysesShentong Fang, Patrizia Agostinis, Petri Salven and Abhishek D. Garg9. Computational methods in tumor immunologyBhavneet Bhinder and Olivier Elemento10. Deconvoluting tumor-infiltrating immune cells from RNA-seq data using quanTIseqChristina Plattner, Francesca Finotello and Dietmar Rieder11. Concurrent in situ analysis of point mutations and immune infiltrate in FFPE cancersAnn-Marie Baker and Trevor A. Graham12. RNA interference screening methods to identify proliferation determinants and mechanisms of resistance to immune attackYong-Wei Zhang, Rochelle E. Nasto, Sandra A. Jablonski, Ilya G. Serebriiskii, Rishi Surana, Joseph Murray, Michael Johnson, Rebecca B. Riggins, Robert Clarke, Erica A. Golemis and Louis M. Weiner13. An altered miTRAP method for miRNA affinity purification with its pros and consSimon Jasinski-Bergner, Christoforos Vaxevanis, Nadine Heimer, Maria-Filothei Lazaridou, Michael Friedrich and Barbara Seliger14. Identification of immunomodulatory RNA-binding proteins in tumorsMichael Friedrich, Maria-Filothei Lazaridou, Jette Rahn, Christoforos Vaxevanis, Nadine Heimer, Simon Jasinski-Bergner and Barbara Seliger15. Techniques for the generation of humanized mouse models for immuno-oncologyChun I. Yu, Florentina Marches, Te-Chia Wu, Jan Martinek and Karolina Palucka