OMICs-based Techniques for Global Food Security

Name: OMICs-based Techniques for Global Food Security
Brand: Wiley
Price: 146.99 EUR
Availability: OnlineOnly

Sajid Fiaz Channapatna S. Prakash(Herausgeber*in)

Wiley (Verlag)

1. Auflage

Erschienen am 15. März 2024

320 Seiten

E-Book

PDF mit Adobe-DRM

Systemvoraussetzungen

978-1-394-20913-2 (ISBN)

146,99 €inkl. 7% MwSt.

Systemvoraussetzungen

für PDF mit Adobe-DRM

E-Book Einzellizenz

Als Download verfügbar

Beschreibung

OMICs-based Techniques for Global Food Security

Forward-thinking resource discussing how to integrate OMICs and novel genome editing technologies for sustainable crop production

OMICS-based Techniques for Global Food Security provides an in-depth understanding of the mechanisms of OMICs techniques for crop improvement, details how OMICs techniques can contribute to identifying genes and traits with economic benefits, and explains how to develop crop plants with improved yield, quality, and resistance to stresses through genome editing technologies, providing evidence on the developments of climate resilient crops via applications of genome editing techniques throughout.

The text covers the application of OMICs in crop plants, the integration of bioinformatics and multi-OMICs for precision breeding, de-novo domestication, CRISPR/Cas system for crop improvement, hybrid seed production, transgene free breeding, regulation for genome edit crops, bioinformatics and genome editing, and other topics related to OMICs and genome editing.

The text also includes a chapter on global regulations for genome edited crops, and explains how these regulations influence novel plant breeding techniques in their adopted countries.

Edited by two highly qualified academics, OMICs-based Techniques for Global Food Security covers topics such as:

* Crops genome sequencing and their application for crop improvement, and functional characterization of cereal genome
* The role of OMICs-based technologies in plant sciences and utilization of different multi-OMICs approaches for crop improvement
* Genomic database and genetic resource of cereals, speed breeding for rapid crop improvement, and evolution of genome editing technologies
* CRISPR system discovery, history, and future perspective, and CRISPR/Cas system for biotic and abiotic stress resistance in cereals

Providing a collection of recent literature focusing on developments and applications of OMICs-based technologies for crop improvement, OMICs-based Techniques for Global Food Security is an important read for plant breeders, molecular biologists, researchers, postdoctoral fellows, and students in disciplines for developing crops with high yield and nutritional potential.

Weitere Details

Weitere Ausgaben

Personen

Inhalt

Cover
Title Page
Copyright
Contents
List of Contributors
Preface
Chapter 1 Crop Genome Sequencing and their Application for Crop Improvement
1.1 Crop Genome Sequence
1.2 Genomics and Its Contribution to Agricultural Improvements
1.3 Genome-Assisted Advances in Crops
1.3.1 Genomic Advances in Rice
1.3.2 Genomic Advances in Pepper
1.3.3 Genomic Advances in Legumes
1.3.4 Genomic Advances in Wheat
1.4 Methods of Crop Genome Sequencing
1.4.1 Genotype by Sequencing Method (GBS)
1.4.2 Single Primer Enrichment Technology
1.4.3 Comparison of Whole Genome Sequencing vs Targeted Genome Sequencing
1.5 Application of Crop Genome Sequencing for Crop Improvement
1.5.1 Accelerating Breeding
1.5.2 Speed Breeding (SB)
1.5.3 Rapid Trait Mapping
1.5.4 Crop Evolution
1.6 Identification of Disease Resistance of Genes
1.6.1 Genome-Assisted Breeding for Abiotic Stress Tolerance
1.7 Case Studies of Crop Genome Sequencing
1.7.1 Examples of Successful Crop Improvement Through Genome Sequencing
1.7.1.1 Rice
1.7.1.2 Maize
1.7.1.3 Wheat
1.7.1.4 Tomato
1.7.1.5 Soybean
1.7.1.6 Potato
1.7.1.7 Apple
1.7.1.8 Barley
1.7.1.9 Cotton
1.8 Discussion of Potential Future Applications and Impacts
1.8.1 Precision Agriculture
1.8.2 Climate Resilience
1.8.3 Nutrition and Health
1.8.4 Sustainable Agriculture
1.8.5 Crop Protection
1.9 Challenges and Limitations of Crop Genome Sequencing for Crop Improvement
1.10 Possible Solutions
1.11 Lack of Funding for Research in Crop Genome Sequencing
1.12 Possible Solutions
1.13 Lack of Incentives for Private Companies to Invest in Crop Genome Sequencing
1.14 Possible Solutions
1.15 Conclusion
References
Chapter 2 Functional Characterization of Cereal Genomics
2.1 Introduction
2.2 Cereal Genomes
2.2.1 Importance of Cereal Crops
2.3 Genetic Aspects of Cereal Crops
2.4 Comparison of Cereal Genomes
2.4.1 Genomic Size
2.4.2 Chromosome Number and Gene Content
2.4.3 Synteny, Collinearity, and Repetitive Elements
2.5 Genomic Diversity in Cereals
2.5.1 Sources of Genomic Diversity
2.5.2 Importance of Genomic Diversity
2.6 Functional Genomics
2.6.1 Application of Functional Genomics in Cereals
2.6.2 Characterization of Functional Genes in Cereals
2.6.3 Objectives of Functional Characterization of Cereal Genomes
2.7 Cereal Gene Function Analysis
2.7.1 Techniques for Gene Function Analysis in Cereals
2.7.1.1 Gene Deactivation/Reduction
2.7.1.2 Gene Amplification
2.7.1.3 Phenotype Analysis
2.7.1.4 Co-expression Analysis
2.7.1.5 Pathway Analysis
2.7.1.6 Functional Assays
2.7.2 Enhancing Cereal Yield Through Genomic Strategies
2.7.2.1 Yield QTL Mapping
2.7.2.2 Analysis of Gene Expression
2.7.2.3 Yield Gene Editing
2.7.3 Utilization of Genomic Resources for Marker-Assisted and Genomic Selection
2.8 Applications of Functional Characterization of Cereal Genomes in the Real World
2.9 Functional Genes' Role in Stress Response and Cereal Development
2.9.1 Development
2.9.2 Stress Response
2.10 Impact of Genetically Modified Cereals
2.10.1 Positive Effects
2.10.2 Negative Effects
2.11 Cereal Functional Genomics: Prospects and Challenges for the Future
2.12 Conclusion
References
Chapter 3 Role of OMICS-Based Technologies in Plant Sciences
3.1 Introduction
3.2 Omics Technologies in Plant Sciences
3.2.1 Genomics
3.2.2 Structural Genomics
3.2.3 Functional Genomics
3.2.4 Mutagenomics
3.2.5 Epigenomics
3.2.6 Pangenomics
3.2.7 Transcriptomics
3.2.8 Proteomics
3.2.9 Metabolomics
3.2.10 Ionomics
3.2.11 Phenomics
3.3 Conclusion and Perspective
References
Chapter 4 OMICS-Based Knowledge for Achieving Food and Nutritional Security
4.1 Introduction
4.2 Applications of OMICS in Agriculture
4.2.1 Crop Improvement and Breeding
4.2.2 Disease and Pest Management
4.2.3 Environmental Stress Adaptation
4.2.4 Sustainable Agriculture and Resource Management
4.2.5 Role of OMICS in Advancing Agriculture and Nutrition
4.2.6 Genomics and its Role in Food Security
4.2.7 Genomic Tools for Crop Improvement
4.2.8 Genetic Diversity and Germplasm Conservation
4.2.9 Marker-Assisted Breeding for Enhanced Nutritional Content
4.2.10 Transcriptomics: Unveiling Gene Expression in Crops
4.3 Transcriptome Analysis Techniques
4.3.1 Transcriptomics in Stress Response and Resilience
4.3.2 Enhancing Nutritional Traits Through Transcriptomics
4.3.3 Proteomics and Metabolomics: Profiling Crop Proteins and Metabolites
4.3.4 Metabolomics in Nutritional Analysis
4.4 Metabolic Pathways for Nutrient Enrichment
4.4.1 Strategies for Synthetic Metabolic Engineering
4.4.2 Strategies for Multigene Transformation
4.4.3 Functional Genomics for Improved Crop Traits
4.4.4 CRISPR-Cas and Genome Editing for Crop Modification
4.4.5 RNA Interference (RNAi) for Pest and Disease Resistance
4.4.6 Synthetic Biology for Nutritional Enhancement
4.4.7 Nutrigenomics: Linking Genes to Nutritional Health
4.4.8 Nutrigenomics and Personalized Nutrition
4.4.9 Identifying Nutritional Requirements based on Genetic Profiles
4.5 Bioinformatics and Data Analysis in OMICS
4.5.1 Handling and Processing Large-Scale OMICS Data
4.5.2 Predictive Modeling for Crop Performance and Nutrient Content
4.6 OMICS Applications in Addressing Nutritional Deficiencies
4.6.1 Biofortification Strategies for Micronutrients
4.6.2 Developing High-Protein and High-Vitamin Varieties
4.7 Challenges and Ethical Considerations in OMICS-Based Agriculture
4.7.1 Socioeconomic Implications of Biotechnology in Agriculture
4.8 Intellectual Property Rights and Access to Genetic Resources
4.9 Integration of OMICS in Sustainable Agriculture
4.10 Potential Impact on Global Food and Nutritional Security
4.11 Future Prospects and Conclusions
References
Chapter 5 Utilization of Multi-Omics Approaches for Crop Improvement
5.1 Introduction
5.2 Pre-Omic Evolutionary Era
5.3 Omics Approaches in Crop Breeding
5.3.1 Metabolomics
5.3.1.1 Metabolomics Operational Plan
5.3.1.2 Advances in Metabolomics Technologies
5.3.1.3 Metabolomics-Assisted Crop Improvement
5.3.2 Transcriptomics
5.3.2.1 Advances in Transcriptomics Techniques
5.3.2.2 Transcriptomics-Assisted Crop Improvement
5.3.3 Genomics
5.3.3.1 Translational Genomics
5.3.4 Proteomics
5.3.4.1 Protein-Metabolite Interactions (PMI)
5.3.4.2 Protein-Protein Interactions (PPI)
5.3.4.3 Advances in Proteomics Techniques
5.3.5 PanGenomics
5.3.6 Phenomics
5.3.7 Epigenomics
5.3.8 Ionomics
5.3.9 Interactomics
5.4 Integrated-Omics Approaches
5.4.1 Transcriptomics-Metabolomics Integration
5.4.2 Genomics-Transcriptomics Integration
5.4.3 Transcriptomics-Proteomics Integration
5.4.4 Transcriptomics-Epigenomics Integration
5.4.5 Conclusion and Future Avenues of Omics
References
Chapter 6 Genomic Databases and Genetic Resources of Cereals
6.1 Introduction
6.2 Wheat (Triticum aestivum)
6.3 Rice (Oryza sativa)
6.4 Maize (Zea mays)
6.5 Barley (Hordeum vulgare)
6.6 Sorghum (Sorghum bicolor)
6.7 Millets (Pennisetum glaucum)
6.8 Triticale
6.9 Oat
6.10 Role of Plant Genetic Resources in Food Security
6.10.1 Plant Genetic Resources for Crop Improvement
6.10.2 Genetic Data Base
6.10.3 Gramene Genomic Database
6.10.4 URGI
6.10.5 Rice Genome Annotation Project, Rice Genome Hub
6.10.6 Maize Genome Database
6.10.7 SorghumBase Database
References
Chapter 7 Speed Breeding for Rapid Crop Improvement
7.1 Introduction
7.1.1 Concept of Speed Breeding (SB)
7.1.2 Light Spectrum
7.1.3 Photoperiod
7.1.4 Temperature
7.1.5 Moisture Level
7.1.6 Nutrition Level
7.1.7 Carbon Dioxide (CO2) Levels
7.2 Scope of Harvesting Immature Seeds Under Speed Breeding
7.3 Plant Density: A Circumstantial Advantage
7.4 History and Evolution of Seed Breeding (SB)
7.4.1 Types of Speed Breeding Facilities
7.5 Advantages of Speed Breeding
7.5.1 Speed Breeding and its Ability to Adapt Modern Technologies
7.5.2 Rapid Generations Through (CSB) Controlled System Breeding Approach
7.5.3 Role of Artificial Intelligence (AI) in Increasing the Efficiency Through Automation of Speed Breeding (SB)
7.5.4 Training the Next Generation of Breeders with Speed Breeding (SB)
7.6 Success Stories of Speed Breeding
7.7 Challenges (Limitations of Speed Breeding)
7.8 Conclusions
References
Chapter 8 CRISPR System Discovery, History, and Future Perspective
8.1 Introduction
8.2 Genome Editing: Concepts, Technologies, and Recent Advancements
8.2.1 Zinc-Finger Nucleases (ZFNs)
8.2.2 Transcription Activator-like Effector Nucleases (TALENs)
8.2.3 CRISPR/CAS (Clustered Regularly Interspaced Short Palindromic Repeat/CRISPR-Associated Protein)
8.3 History and Origin of CRISPR Technology
8.4 CRISPR-Cas Systems: From Bacterial Immunity to Diverse Applications
8.5 CRISPR Application in Plant Science and Agriculture
8.6 Conclusion
References
Chapter 9 The Evolution of Genome-Editing Technologies
9.1 Introduction
9.2 The Early Beginnings of Genome Editing: Restriction Enzymes and Transgenic Animals
9.3 The Advent of Programmable Nucleases: Zinc Finger Nucleases and TALENs
9.4 The Rise of CRISPR-Cas9: From Basic Research to Genome Editing Revolution
9.5 Expansion of the CRISPR Toolkit: Alternatives to Cas9 and Advances in Delivery Methods
9.6 The Future of Genome Editing: Integration with Other Technologies and Potential Applications
9.7 Ethical Considerations and Societal Implications of Genome Editing Technology
9.8 The Ongoing Evolution of Genome Editing and Its Impact on Science and Society
9.9 Conclusion
References
Chapter 10 CRISPR/Cas-Mediated Biotic Stress Resistance in Cereals for Achieving Zero Hunger
10.1 Introduction
10.2 Effect of Biotic Stressors on Cereals
10.3 Plant Genome-Editing Approaches
10.4 CRISPR/Cas Systems
10.4.1 CRISPR/Cas-Mediated DNA Editing
10.4.1.1 CRISPR/Cas9
10.4.1.2 CRISPR/Cas12a
10.4.2 CRISPR/Cas for RNA Editing
10.4.2.1 RCas9 Variant
10.4.2.2 FnCas9 Variant
10.4.2.3 CRISPR/Cas13
10.5 CRISPR/Cas System in Agriculture for Managing Pathogenic Diseases
10.5.1 Fungal Disease Resistance in Cereals Through CRISPR/Cas
10.5.2 Viral Disease Resistance in Cereals Through CRISPR/Cas
10.5.3 Bacterial Disease Resistance in Cereals Through CRISPR/Cas
10.6 CRISPR-Cas System in Agriculture for Managing Insect Pests
10.6.1 Insect Pest Resistance Through CRISPR/Cas
10.6.2 Domestication of Crop Wild Relatives (CWRs) for Managing Insect Pests
10.6.3 CRISPR-Cas-Associated Gene Drive for Managing Insect Pests
10.6.4 CRISPR-Cas-Associated Genome Editing of Crop Plants for Managing Insect Pests
10.7 Conclusion
References
Chapter 11 CRISPR/Cas System for Achieving Abiotic Stress Tolerance
11.1 Introduction
11.2 CRISPR/Cas System (Genome Editing, Categories, Classes, and Types of CRISPR)
11.2.1 Categories
11.2.2 Classes
11.2.3 Types
11.2.3.1 Class I Type CRISPR-Cas System
11.2.3.2 Class II Type CRISPR-Cas System
11.2.3.3 Class III Type CRISPR-Cas System
11.2.3.4 Class IV Type CRISPR-Cas System
11.3 Identification of Abiotic Corresponding Genes in Crops
11.4 Current Status of Abiotic Stress Tolerance in Cash Crops
11.5 CRISPR/Cas System-Mediated Targeting on Salt Stress
11.6 CRISPR/Cas System-Mediated Targeting on Drought Stress
11.7 CRISPR/Cas System-Mediated Targeting on Mineral Toxicity
11.8 CRISPR/Cas System-Mediated Targeting on Cold Stress
11.9 CRISPR/Cas System in Plants that Combats Cold Stress
11.9.1 Identification of Important Genes and Metabolic Pathways in Plants Responses to Cold Stress
11.10 CRISPR/Cas System-Mediated Targeting of Cold Stress Response Genes
11.11 Benefits and Drawbacks of CRISPR/Cas System to Make Genetic Changes in Plants to Withstand Cold Stress
11.11.1 Advantages
11.11.2 Limitations
11.12 CRISPR/Cas System-Mediated Targeting on Heat Stress
11.13 Physiological and Molecular Responses of Plants to Heat Stress
11.14 Heat Stress Response for Precise Genetic Alterations in Plants
11.15 CRISPR/Cas System-Mediated Targeting of Heat Stress Response Genes in Plants
11.16 Potential Applications and Future Perspectives
11.16.1 Ongoing Research and Future Directions in Utilizing CRISPR/Cas System for Heat Stress Tolerance Enhancement in Plants
11.17 Conclusion
References
Chapter 12 Technological Innovations for Abiotic Stress Resistance in Horticultural Crops
12.1 Introduction
12.2 Traditional Approaches to Abiotic Stress Resistance
12.2.1 Breeding for Abiotic Stress Resistance
12.2.2 Physiological and Biochemical Approaches
12.3 Technological Innovations for Abiotic Stress Resistance
12.3.1 Genetic Engineering and Genome Editing
12.3.1.1 Application of Genome Editing to Increase Abiotic Stress Tolerance in Horticultural Crops
12.3.2 Precision Agriculture and Remote Sensing
12.4 Challenges and Future Directions
12.4.1 Challenges in the Adoption and Implementation of Technological Innovations
12.4.2 Future Directions for Research and Development
12.5 Discussion and Conclusion
References
Chapter 13 Novel CRISPR-Based Genome Editing Systems for Crop Improvement
13.1 Introduction
13.2 Conventional Methods for Genome Editing
13.3 Overview of the CRISPR/CAS System
13.4 Classification of CRISPR/Cas System
13.5 Modifications of the CRISPR/Cas9
13.5.1 Base Editing
13.5.2 Prime Editing
13.6 Gene Targeting by CRISPR/Cas for Genome Modification
13.6.1 Gene Insertion/Deletion
13.6.2 Gene Replacement
13.6.3 Substitution
13.6.4 Multiplex Genome Editing by CRISPR/Cas9
13.7 Advantages of CRISPR over Other Gene-Editing Techniques
13.7.1 Speed and Precision
13.7.2 Flexibility
13.7.2.1 Targeting Multiple Genes
13.7.2.2 Editing Various Types of Mutations
13.7.2.3 Epigenetic Modifications
13.7.3 Cost-Effective
13.7.4 Simplified Design and Delivery
13.7.5 Ease of Use
13.7.6 Editing Efficiency
13.7.7 Adaptation to Local Conditions
13.8 Role of CRISPR/Cas in Crop Improvement
13.8.1 Disease Resistance
13.8.2 Yield Improvement and Stress Resistance
13.8.2.1 Nutritional Enhancement
13.8.3 Drought Tolerance
13.8.4 Extending Shelf Life
13.8.5 Quality Improvement
13.9 Case Study
13.10 Potential Challenges and Concerns with CRISPR/Cas in Crop Improvement
13.10.1 Regulatory Challenges
13.10.2 Ethical Concerns
13.10.3 Potential Unintended Consequences of Gene Editing
13.11 Transparency Needs and Public Engagement
13.12 Concluding Remarks and Future Perspective
References
Chapter 14 Precise Genome Editing of Plants Through Base and Prime Editor
14.1 Introduction
14.2 CRISPR/CAS9
14.3 Base Editing (BE)
14.3.1 A??T to G??C Editor
14.3.2 Improving the Efficiency of the Prime Editor
14.3.3 Delivery Method
14.3.3.1 Base Editors
14.4 Prime Editing (PE)
14.4.1 PEs Target Efficiency
14.4.2 Editors' Applications in Crop Plants
14.5 Disease Resistance
14.6 Nutrition and Yield
14.7 Future Prospectus
References
Index
EULA

Systemvoraussetzungen

Als PDF speichern Als Link merken