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Preface xii
1 Solution Chemistry of Iron 1
1.1 Iron Chemistry 1
1.2 Interactions of Iron with Dioxygen and Chemistry of Oxygen Free Radicals 2
1.3 Hydrolysis of Iron Salts 5
1.4 Formation and Characterisation of Ferrihydrite 7
1.5 Ageing of Amorphous Ferrihydrite to more Crystalline Products 10
1.6 Biomineralisation 11
1.7 Magnetite Biomineralisation by Magnetotactic Bacteria 13
1.7.1 Biogenesis of the Magnetosome Membrane 15
1.7.2 Protein Sorting 15
1.7.3 Chain Formation 16
1.7.4 Biomineralisation 16
1.7.5 A Model for Magnetosome Formation 17
References 18
2 The Essential Role of Iron in Biology 22
2.1 Introduction: Iron an Essential Element in Biology 22
2.2 Physical Techniques for the Study of Iron in Biological Systems 25
2.3 Classes of Iron Proteins 29
2.4 Haemoproteins 29
2.4.1 Oxygen Carriers 30
2.4.2 Activators of Molecular Oxygen 34
2.4.3 Electron Transport Proteins 38
2.5 Iron-Sulphur Proteins 41
2.6 Non-haem, Non-Fe-S Proteins 48
2.6.1 Mononuclear Non-haem Iron Enzymes 48
2.6.2 Dinuclear Non-haem Iron Proteins 55
2.6.3 Proteins of Iron Storage, Transport and Metabolism 61
2.7 The Dark Side of Iron: ROS, RNS and NTBI 62
2.7.1 ROS and RNS 63
2.7.2 NTBI and LPI 64
References 64
3 Microbial Iron Uptake 71
3.1 Introduction 71
3.2 Iron Uptake from Siderophores 74
3.2.1 Siderophores 74
3.2.2 Iron Transport across the Outer Membrane in Gram-negative Bacteria 78
3.2.3 Transport across the Periplasm and Cytoplasmic Membrane in Gram-negative Bacteria 86
3.2.4 Iron Uptake by Gram-positive Bacteria 92
3.3 Fe2+ Transport Systems 93
3.4 Iron Release from Siderophores in the Cytoplasm 97
3.5 Intracellular Iron Metabolism 98
3.6 Control of Gene Expression by Iron 101
References 108
4 Iron Acquisition by Pathogens 120
4.1 Introduction 120
4.2 Host Defence Mechanisms, Nutritional Immunity 121
4.3 Pathogenicity and PAIs 123
4.4 Pathogen-specific Iron Uptake Systems 125
4.4.1 Siderophores Associated with Virulence 125
4.4.2 Transferrin/lactoferrin Iron Uptake 126
4.4.3 Haem Iron Uptake 133
4.4.4 Ferrous Iron Uptake 138
4.4.5 Ferric Citrate Uptake by Bacillus cereus 141
4.5 Role of Fur and Fur Homologues in Virulence 141
4.6 Role of Pathogen ECF Sigma Factors 141
4.7 Fungal Pathogens 143
References 146
5 Iron Uptake by Plants and Fungi 155
5.1 Iron Uptake by Plants 155
5.1.1 Introduction 155
5.1.2 Genome Sequencing 157
5.1.3 Iron Acquisition by the Roots of Plants 160
5.1.4 Long-distance Iron Transport 166
5.2 Iron Metabolism and Homeostasis in Plants 169
5.2.1 New Tools in Plant Research 169
5.2.2 Intracellular Iron Metabolism 170
5.2.3 Plant Iron Homeostasis 171
5.2.4 Diurnal Regulation of Iron Homeostasis 176
5.3 Iron Uptake, Metabolism and Homeostasis in Fungi 178
5.3.1 Introduction 178
5.3.2 High- and Low-affinity Iron Uptake Pathways 179
5.3.3 Siderophore-mediated Iron Uptake 184
5.3.4 Intracellular Iron Metabolism 185
5.3.5 Iron Homeostasis 186
References 190
6 Cellular Iron Uptake and Export in Mammals 205
6.1 The Transferrins 205
6.1.1 Introduction 205
6.1.2 The Transferrin Family 206
6.1.3 Structure of Transferrins 211
6.1.4 Transferrin iron Binding 215
6.1.5 Binding of other Metals by Transferrin 218
6.2 Cellular Iron Uptake 219
6.2.1 The Transferrin Receptors 219
6.2.2 The Transferrin to Cell Cycle and Iron Release 222
6.2.3 Iron Uptake from other Sources 228
6.3 Cellular Iron Export 230
References 236
7 Mammalian Iron Metabolism and Dietary Iron Absorption 247
7.1 An overview of Mammalian Iron Metabolism 247
7.1.1 Introduction 247
7.1.2 The Way Different Cells Handle Iron 249
7.2 Mammalian Iron Absorption 251
7.2.1 Introduction 251
7.2.2 The Intestinal Mucosa 252
7.2.3 Sources of Dietary Iron 253
7.2.4 Iron Loss and Effects on Uptake 255
7.3 Molecular Mechanisms of Mucosal Iron Absorption 256
7.3.1 Iron Uptake at the Apical Pole 256
7.3.2 Iron Transit through and Storage in Enterocytes 259
7.3.3 Iron Efflux across the Basolateral Membrane 259
7.3.4 Regulation of Iron Uptake by the Enterocyte 261
References 261
8 Intracellular Iron Utilisation 265
8.1 Intracellular Iron Pools 265
8.1.1 Introduction 265
8.1.2 The Cytosolic Labile Iron Pool (LIP) 266
8.1.3 Distribution of Iron in the Cytosol 268
8.1.4 Other Intracellular Iron Pools 269
8.2 Mitochondrial Iron Metabolism 271
8.2.1 Mitochondrial Iron Uptake and Storage 271
8.2.2 Mitochondrial Fe-S Protein Biogenesis 271
8.2.3 Maturation of Cytosolic and Nuclear Fe-S Proteins 275
8.2.4 Haem Biosynthesis 283
8.3 Haem Oxygenase 287
8.3.1 Structure and Catalytic Cycle 287
8.3.2 Activation of Haem Oxygenase 1 (HO-1) 292
References 292
9 Iron Storage Proteins 300
9.1 Introduction 300
9.2 The Ferritin Superfamily and Haemosiderins 301
9.2.1 The Ferritin Superfamily 301
9.2.2 Structure of Vertebrate and Invertebrate Ferritins 304
9.2.3 Plant and Bacterial Ferritins 308
9.2.4 Dps Proteins and Rubrerythrins 313
9.2.5 The Mineral Core 319
9.2.6 Haemosiderins 319
9.3 Iron Uptake and Release from Ferritin 320
9.3.1 Iron Uptake in Ferritins 320
9.3.2 Iron Uptake in Dps Proteins 333
9.3.3 Iron Release from Ferritin 333
9.4 Biotechnological Applications of Ferritins 335
References 336
10 Cellular and Systemic Iron Homeostasis 346
10.1 Cellular Iron Homeostasis 346
10.1.1 Translational Control of Protein Synthesis 346
10.1.2 The IRE/IRP System 347
10.1.3 The IREs - distribution and Structure 348
10.1.4 Structural Features of IRP1 and 2 351
10.1.5 The IRE/IRP System Revisited - Iron Controls Iron 353
10.1.6 Metabolic Consequences of Mutations in IREs 357
10.2 Systemic Iron Homeostasis 357
10.2.1 Introduction 357
10.2.2 Hepcidin, the Key Player 358
10.2.3 Factors which Regulate Hepcidin Synthesis 360
10.3 Integration of Iron Homeostatic Systems 367
References 367
11 Iron Deficiency, Iron Overload and Therapy 376
11.1 Iron-deficiency Anaemia (IDA) 376
11.1.1 Introduction - The Size of the Problem 376
11.1.2 Causes of IDA 378
11.1.3 Clinical Stages and Diagnosis of IDA 380
11.1.4 Therapeutic Approaches 383
11.1.5 Anaemia of Chronic Disease (ACD), Iron Refractory IDA (IRIDA) and Anaemia of Chronic Kidney Disease (CKD) 384
11.2 Hereditary Iron Overload 386
11.2.1 Introduction 386
11.2.2 Hereditary Haemochromatosis (HH) 386
11.2.3 Causes of HH 387
11.2.4 Types of Haemochromatosis 388
11.2.5 Therapy of Hereditary Haemochromatosis 391
11.3 Acquired Iron Overload 395
11.3.1 Introduction - Causes of Acquired Iron Overload 395
11.3.2 Mechanisms of Iron Toxicity 397
11.3.3 Evaluation of Iron Overload 398
11.3.4 Chelation Therapy for Acquired Iron Overload 400
11.3.5 Other Therapeutic Approaches 405
References 406
12 Iron and Immunity 418
12.1 Introduction 418
12.1.1 Innate Immunity 419
12.2 The Key Role of Macrophages 422
12.2.1 Overview 422
12.2.2 Macrophage Phenotypes 425
12.2.3 Microglia 426
12.3 Effect of Iron Status on Phagocytic Cell Function 429
12.3.1 Iron Deficiency 429
12.3.2 Iron Overload 430
12.4 Effect of Phagocytic Cell Function on Iron Metabolism 431
12.4.1 The IRE-Iron Regulatory Protein (IRP) System 431
12.5 Effector Molecules of the Innate Immune System 433
12.5.1 Toll-like Receptors 433
12.5.2 NF-¿B 433
12.5.3 Hypoxia-Inducible Factor 1 (HIF 1) 434
12.5.4 Haem Oxygenase 435
12.5.5 DMT1, Nramp1 437
12.6 Adaptive Immunity 437
12.6.1 Cd8+ Lymphocytes and Cytotoxicity 438
12.6.2 CD4+ lymphocytes 438
12.7 Immune Function and other Factors 438
12.7.1 Iron Supplementation and Immune Function 438
12.7.2 Immune Function in the Elderly Population 439
12.7.3 Iron Overload and Immune Function 439
12.7.4 Thalassaemia 440
12.8 Concluding Remarks 440
References 440
13 Iron and Oxidative Stress 444
13.1 Oxidative stress 444
13.1.1 Introduction - Milestones in the History of Life 444
13.1.2 Reactive Oxygen Species (ROS) and Reactive Nitrogen Species (RNS) 447
13.1.3 Cellular Defence Mechanisms Against Oxidative Stress 450
13.1.4 Role of ROS and RNS in Cell Signalling 460
13.1.5 ROS, RNS and Oxidative Damage 466
References 476
14 Interactions between Iron and other Metals 482
14.1 Introduction 482
14.2 Iron Interactions with Essential Metals 483
14.2.1 Copper 483
14.2.2 Zinc 494
14.2.3 Cobalt 497
14.2.4 Manganese 500
14.2.5 Calcium 501
14.3 Iron Interactions with Toxic Metals 502
14.3.1 Lead 502
14.3.2 Cadmium 503
14.3.3 Aluminium 505
References 507
15 Iron Homeostasis and Neurodegeneration 516
15.1 Introduction 516
15.2 Brain iron 517
15.2.1 Brain Iron Homeostasis 517
15.2.2 Aging and Brain Iron Content 518
15.3 Iron and Neurodegeneration 522
15.3.1 Introduction 522
15.3.2 Adverse Effects of Iron in Neurodegeneration 522
15.4 Neurodegeneration with Brain Iron Accumulation 524
15.4.1 Aceruloplasminaemia 524
15.4.2 Neuroferritinopathy 526
15.4.3 Other NBIAs 528
15.5 Other Monogenic Neurodegenerative Diseases 530
15.5.1 Huntington's Disease 530
15.5.2 Friedreich's Ataxia 532
15.6 Neurodegeneration Involving Multiple Genes 533
15.6.1 Parkinson's Disease (PD) 533
15.6.2 Alzheimer's Disease (AD) 535
15.6.3 Multiple Sclerosis (MS) 537
15.7 Intracerebral Haemorrhage 538
References 539
Concluding Remarks 544
Index 547
It is astonishing to realise that a slim volume of some 260 pages (Crichton, 1991), first conceived in the course of a discussion with the egregious Ellis Horwood at the Christmas buffet of the Royal Society of Chemistry Inorganic Biochemistry Discussion Group, has grown to such a size. Ellis Horwood had established his own scientific publishing house, Ellis Horwood Limited, based in the charming old Market Cross House in the West Sussex town of Chichester and, with his usual inimitable enthusiasm, he persuaded me - rather easily as it turned out - to contribute to his series of Inorganic Chemistry books. The outcome was Inorganic Biochemistry of Iron Metabolism, and any thoughts of subsequent editions had certainly not crossed my mind.
I say rather easily, because since the publication of the proceedings of the second meeting on proteins of iron storage and transport (Crichton, 1975), there had been a void which was crying out to be filled for a definitive work which would bring together an overview of the dramatic developments which had been taking place in the field of iron metabolism since then. All of the manuscripts of the presentations at that meeting in Louvain-la-Neuve were incorporated into the book Proteins of Iron Storage and Transport in Biochemistry and Medicine, produced by North Holland/American Elsevier in record time - the meeting was held from 2nd-5th April, 1975 and the book (all 454 pages) appeared in July of that year! They included the contribution by Jean Montreuil and Genevieve Spik from Lille, who arrived without a manuscript, but after being closeted in an office with an English-speaking secretary, duly produced the goods before the end of the meeting, as well as Clem Finch's Concluding Remarks recorded on a Dictaphone at the end of the meeting, typed that evening during the concluding Banquet, and duly dispatched, corrected, the following morning along with all of the other camera-ready texts. This volume, which represented the first time that all of the major figures on the iron scene had published jointly what was a sort of 'state of the art of iron metabolism, 1975', sold over 600 copies, and was still being cited more than a decade after the meeting itself. However, despite intermittent efforts after the New York meeting in 1977, the Sapporo meeting in 1983 and the Lille meeting in 1985 (Brown et al., 1977; Uroshizaki et al., 1983; Spik et al., 1985), there was a real potential for a book that would bring together all aspects of iron metabolism.
My decision to undertake this ambitious project was greatly facilitated by the fact that I was in line for a sabbatical - in reality six rather than 12 months - which I spent at the invitation of Professor Robert Freedman in the Biology Department of the University of Kent in Canterbury. Ironically (no pun intended) for the author of a book on inorganic chemistry, my office was in the Chemistry Department. In those prehistoric times one hunted down references on the shelves of the University library overlooking the majestic and historical Cathedral, photocopied them (a new innovation), and then read them, highlighting the important sections. When the references (hunted down in Chemical Abstracts) were not available in Canterbury, one undertook a day trip to London to consult the Science Library there. Then, with reams of fluorescent highlighted papers, one sat down to write one's own text, mostly in my flat on the Canterbury Road in the agreeable seaside town of Whitstable, with its beach and bracing sea air.
The outcome, in 12 chapters, is quite similar to this 4th edition, dealing with iron chemistry, the importance of iron in biology, microbial, plant and fungal iron uptake, transferrin and its receptor (a relatively recent discovery), intracellular iron, iron homeostasis, iron absorption, iron deficiency and overload, iron and oxidative damage and finally, iron and infection. There were some 800 references in all, regrouped at the end of the book, in the classical chemical presentation without title, but with the final page number. I would think that, with the resources then available, I had read the abstracts of all of the articles (in Chemical Abstracts) and read the better part of 50-60% of the most important articles. The figures were entirely in black and white!
When, ten years later, I undertook a 2nd edition (Crichton, 2001), the title - now Inorganic Biochemistry of Iron Metabolism. From Molecular Mechanisms to Clinical Consequences - had been transferred to John Wiley & Sons, and the 326-page outcome even had a central glossy page insert which included 16 'Plates' of coloured figures (all of the others were black and white). For this edition I enlisted the help of six colleagues, Volkmar Braun and Klaus Hantke for microbial iron uptake, Jo Marx and Manuela Santos for the pathophysiology of iron deficiency and iron overload, Roberta Ward for the chapter on oxidative stress, and Johann Boelaert for iron and infection. There were some 1500 references, this time regrouped at the end of each chapter, but again without titles. Once again, it is probable (I cannot speak for my colleagues) that at least the abstracts of the papers cited had been read as well as most of the key articles.
By the time of the 3rd edition (Crichton, 2009), I had returned to the essentially single author format, with two chapters being entrusted to my long-term collaborator, Roberta Ward. Reflecting the way the field was growing, the microbial iron chapter included a view of intracellular iron metabolism, while the plant and fungal chapter highlighted the extraordinary developments in our understanding of yeast iron uptake systems. Although discovered just after the 2nd edition, hepcidin was relegated to the iron absorption chapter in which systemic iron balance was reviewed. The chapter on iron and infection was replaced by a new chapter on brain iron homeostasis and its perturbation in neurodegenerative diseases. Virtually all of the figures were in colour, and the 2200 references this time included titles (which makes for a lot more work - as a colleague remarked, "you can always invent the final page number, but the title..?", yet I think it is more useful in deciding if the reader really wants to hunt it down).
This 4th edition has reached even larger dimensions, with the number of references soaring to over 3500. As in the previous edition, we begin with a chapter on the solution chemistry of iron in biological media, the biologically very important interactions of iron with dioxygen, followed by a short review of hydrolysis of iron salts, the characterisation of ferrihydrite and its ageing to more crystalline products. The chapter concludes with a section on biomineralisation, with particular emphasis on magnetite formation by magnetotactic bacteria. The essential role of iron in biology is once again reviewed in Chapter 2, illustrated by examples drawn where possible from the recent literature.
The section on microbial iron has been subdivided this time into two chapters to take account of the important role of iron acquisition in the virulence of microbial pathogens and, in particular, as potential antimicrobial therapeutic targets. Chapter 3 discusses iron uptake from ferric siderophores in Gram-negative and Gram-positive bacteria, as well as the systems used by both classes of bacteria to take up Fe2+. Iron release from siderophores and intracellular iron metabolism are then reviewed, and the chapter concludes with a discussion of the mechanisms involved in the regulation of gene expression by iron.
Iron sequestration provides the innate host defence, known as nutritional immunity, which leads bacterial and fungal pathogens to scavenge iron from their hosts. Chapter 4 is devoted to iron assimilation by pathogens, beginning with an overview of host defence mechanisms and nutritional immunity. The importance of pathogenicity islands, horizontally transferred mobile genetic elements involved in the dissemination of antibiotic resistance and virulence genes in pathogenic organisms, which frequently also encode iron uptake systems, specific to pathogenic strains (Gyles and Boerlin, 2014) is then outlined. Pathogen-specific iron uptake systems, involving pathogen-specific siderophores, host sources of iron such as transferrin, lactoferrin and haem, ferrous iron and ferric citrate, are then analysed. The structural basis of iron piracy by pathogenic Neisseria from human transferrin has been elucidated (Noinaj et al., 2012). These studies establish a rational basis for the host specificity of TbpA, the TonB-dependent outer membrane transporter for human transferrin, show how TbpA promotes iron release from transferrin, and elucidate how TbpB, the lipoprotein coreceptor, facilitates this process. Recent cloning and sequencing of transferrin orthologues from 21 hominoid monkey species (Barber and Elde, 2014) revealed that hominoid transferrin has undergone recurrent positive selection at the binding interface with bacterial TbpA, providing a mechanism to counteract bacterial iron piracy. The regulation of pathogen iron uptake by Fur and Fur homologues, and by pathogen ECF sigma factors, are discussed, and we conclude with a brief outline of the strategies employed by opportunistic fungal pathogens, which represent a growing health threat, to acquire iron from their host.
Our understanding of iron uptake by plants and fungi has been greatly influenced by the fulgurant progress in genome sequencing, and Chapter 5 presents our current...
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