Advances in Bioinformatics and Computational Biology

The Trouble with Long-Range Base Pairs in RNA Folding.- Roles of RORa on Transcriptional Expressions in the Mammalian Circadian Regulatory System.- HybHap: A Fast and Accurate Hybrid Approach for Haplotype Inference on Large Datasets.- Restricted DCJ-Indel Model Revisited.- MSA-GPU: Exact Multiple Sequence Alignment Using GPU.- MultiSETTER - Multiple RNA Structure Similarity Algorithm.- Assessing the Accuracy of the SIRAH Force Field to Model DNA at Coarse Grain Level.- How to Multiply Dynamic Programming Algorithms.- Influence of Scaffold Stability and Electrostatics on Top7-Based Engineered Helical HIV-1 Epitopes.- Random Forest and Gene Networks for Association of SNPs to Alzheimer's Disease.- Multilayer Cluster Heat Map Visualizing Biological Tensor Data.- On the 1.375-Approximation Algorithm for Sorting by Transpositions in O(n log n) Time.- ncRNA-Agents: A Multiagent System for Non-coding RNA Annotation.- Inference of Genetic Regulatory Networks Using an Estimation of Distribution Algorithm.- A Network-Based Meta-analysis Strategy for the Selection of Potential Gene Modules in Type 2 Diabetes.- RAIDER: Rapid Ab Initio Detection of Elementary Repeats.- A Probabilistic Model Checking Analysis of the Potassium Reactions with the Palytoxin and Na+/K+-ATPase Complex.- False Discovery Rate for Homology Searches.- A Pipeline to Characterize Virulence Factors in Mycobacterium Massiliense Genome.