Proteomics is the study of the subsets of proteins present in different parts of an organism and how they change with time and varying conditions. Mass spectrometry is the leading technology used in proteomics, and the field relies heavily on bioinformatics to process and analyze the acquired data. Since recent years have seen tremendous developments in instrumentation and proteomics-related bioinformatics, there is clearly a need for a solid introduction to the crossroads where proteomics and bioinformatics meet.
Computational Methods for Mass Spectrometry Proteomics describes the different instruments and methodologies used in proteomics in a unified manner. The authors put an emphasis on the computational methods for the different phases of a proteomics analysis, but the underlying principles in protein chemistry and instrument technology are also described. The book is illustrated by a number of figures and examples, and contains exercises for the reader. Written in an accessible yet rigorous style, it is a valuable reference for both informaticians and biologists.
Computational Methods for Mass Spectrometry Proteomics is suited for advanced undergraduate and graduate students of bioinformatics and molecular biology with an interest in proteomics. It also provides a good introduction and reference source for researchers new to proteomics, and for people who come into more peripheral contact with the field.
Rezensionen / Stimmen
"I will suggest it to new staff entering our computational biology group that would like to work with LC-MS/MS data. I look forward to see what the authors have in store for the next edition." (J Am Soc Mass Spectrom, 2011)
Auflage
Sprache
Verlagsort
Verlagsgruppe
Zielgruppe
Maße
Höhe: 24.4 cm
Breite: 16.8 cm
Dicke: 2.2 cm
Gewicht
ISBN-13
978-0-470-51297-5 (9780470512975)
Schweitzer Klassifikation
Ingvar Eidhammer. Associate Professor, Department of Informatics, University of Bergen, Norway Lennart Martens. European Bioinformatics Institute, EBI, Hinxton, Cambridge, UK
Svein-Ole Mikalsen. The Norwegian Radium Hospital, Oslo, Norway
Kristian Flikka. University of Bergen, Norway
Autor*in
University of Bergen, Norway
University of Bergen, Norway
European Bioinformatics Institute (EBI), Cambridge, UK
The Norwegian Radium Hospital, Oslo, Norway
Contents
Preface
1 Protein, Proteome, and Proteomics
2 Protein Separation - 2D Gel Electrophoresis
dimension
3 Protein Digestion
4 Peptide Separation - HPLC
phase chromatography
5 Fundamentals of Mass Spectrometry
6 Mass Spectrometry - MALDI-TOF
7 Protein Identification and Characterization by MS
8 Tandem MS or MS/MS Analysis
9 Fragmentation Models
10 Identification and Characterization by MS/MS
11 Spectral Comparisons
12 Sequencial Comparison - de novo Sequencing
13 Database Searching for De Novo Sequences
flanking amino acids
14 Large-Scale Proteomics
15 Quantitative Mass Spectrometry-Based Proteomics
16 Peptides to Proteins
of masses
17 Top-Down Proteomics
and mass calculation
18 Standards
Bibliography
Index