
Scientific Parallel Computing
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Scientific Parallel Computing is the first textbook to integrate all the fundamentals of parallel computing in a single volume while also providing a basis for a deeper understanding of the subject. Designed for graduate and advanced undergraduate courses in the sciences and in engineering, computer science, and mathematics, it focuses on the three key areas of algorithms, architecture, languages, and their crucial synthesis in performance.
The book's computational examples, whose math prerequisites are not beyond the level of advanced calculus, derive from a breadth of topics in scientific and engineering simulation and data analysis. The programming exercises presented early in the book are designed to bring students up to speed quickly, while the book later develops projects challenging enough to guide students toward research questions in the field. The new paradigm of cluster computing is fully addressed. A supporting web site provides access to all the codes and software mentioned in the book, and offers topical information on popular parallel computing systems.
- Integrates all the fundamentals of parallel computing essential for today's high-performance requirements
- Ideal for graduate and advanced undergraduate students in the sciences and in engineering, computer science, and mathematics
- Extensive programming and theoretical exercises enable students to write parallel codes quickly
- More challenging projects later in the book introduce research questions
- New paradigm of cluster computing fully addressed
- Supporting web site provides access to all the codes and software mentioned in the book
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Content
- Cover Page
- Title Page
- Copyright Page
- Dedication Page
- Contents
- Preface
- Notation
- Chapter 1. Introduction
- 1.1 Overview
- 1.2 What is parallel computing?
- 1.3 Performance
- 1.4 Why parallel?
- 1.5 Two simple examples
- 1.6 Mesh-based applications
- 1.7 Parallel perspectives
- 1.8 Exercises
- Chapter 2. Parallel Performance
- 2.1 Summation example
- 2.2 Performance measures
- 2.3 Limits to performance
- 2.4 Scalability
- 2.5 Parallel performance analysis
- 2.6 Parallel payoff
- 2.7 Real world parallelism
- 2.8 Starting SPMD programming
- 2.9 Exercises
- Chapter 3. Computer Architecture
- 3.1 PMS notation
- 3.2 Shared memory multiprocessor
- 3.3 Distributed memory multicomputer
- 3.4 Pipeline and vector processors
- 3.5 Comparison of parallel architectures
- 3.6 Taxonomies
- 3.7 Current trends
- 3.8 Exercises
- Chapter 4. Dependences
- 4.1 Data dependences
- 4.2 Loop-carried data dependences
- 4.3 Dependence examples
- 4.4 Testing for loop-carried dependences
- 4.5 Loop transformations
- 4.6 Dependence examples continued
- 4.7 Exercises
- Chapter 5. Parallel Languages
- 5.1 Critical factors
- 5.2 Command and control
- 5.3 Memory models
- 5.4 Shared memory programming
- 5.5 Message passing
- 5.6 Examples and comments
- 5.7 Parallel language developments
- 5.8 Exercises
- Chapter 6. Collective Operations
- 6.1 The @ notation
- 6.2 Tree/ring algorithms
- 6.3 Reduction operations
- 6.4 Reduction operation applications
- 6.5 Parallel prefix algorithms
- 6.6 Performance of reduction operations
- 6.7 Data movement operations
- 6.8 Exercises
- Chapter 7. Current Programming Standards
- 7.1 Introduction to MPI
- 7.2 Collective operations in MPI
- 7.3 Introduction to POSIX threads
- 7.4 Exercises
- Chapter 8. The IPlanguage Model
- 8.1 IPlanguage details
- 8.2 Ranges and arrays
- 8.3 Reduction operations in IPfortran
- 8.4 Introduction to IPC
- 8.5 Reduction operations in IPC
- 8.6 IPlanguages versus message passing
- 8.7 Exercises
- Chapter 9. High Performance Fortran
- 9.1 HPF data distribution directives
- 9.2 Other mechanisms for expressing concurrency
- 9.3 Compiling HPF
- 9.4 HPF comparisons and review
- 9.5 Exercises
- Chapter 10. Loop Tiling
- 10.1 Loop tiling
- 10.2 Work vs. data decomposition
- 10.3 Tiling in OpenMP
- 10.4 Teams
- 10.5 Parallel regions
- 10.6Exercises
- Chapter 11. Matrix Eigen Analysis
- 11.1 The Leslie matrix model
- 11.2 The power method
- 11.3 A parallel Leslie matrix program
- 11.4 Matrix-vector product
- 11.5 Power method applications
- 11.6 Exercises
- Chapter 12. Linear Systems
- 12.1 Gaussian elimination
- 12.2 Solving triangular systems in parallel
- 12.3 Divide-and-conquer algorithms
- 12.4 Exercises
- 12.5 Projects
- Chapter 13. Particle Dynamics
- 13.1 Model assumptions
- 13.2 Using Newton's third law
- 13.3 Further code complications
- 13.4 Pair list generation
- 13.5 Force calculation with a pair list
- 13.6P erformance of replication algorithm
- 13.7 Case study: particle dynamics in HPF
- 13.8 Exercises
- 13.9 Projects
- Chapter 14. Mesh Methods
- 14.1 Boundary value problems
- 14.2 Iterative methods
- 14.3 Multigrid methods
- 14.4 Multidimensional problems
- 14.5 Initial value problems
- 14.6 Exercises
- 14.7 Projects
- Chapter 15. Sorting
- 15.1 Introduction
- 15.2 Parallel sorting
- 15.3 Spatial sorting
- 15.4 Exercises
- 15.5 Projects
- Bibliography
- Index
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