
Perspectives in Animal Phylogeny and Evolution
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Content
- Intro
- Contents
- Preface
- 1 Reading the history of life
- 1.1 Things and processes
- 1.2 Questions about origins
- 1.2.1 Uncertain origins
- 1.2.2 Independent origins
- 1.2.3 Mixed origins
- 1.3 Idola theatri
- 1.3.1 The ladder of nature
- 1.3.2 Morphoclines and Williston's law
- 1.3.3 Finalism, adultocentrism, and division of labour
- 2 Animal phylogenetics
- 2.1 The hennigian foundations of phylogenetics
- 2.2 Stem group and crown group
- 2.3 Characters
- 2.4 Phylogenetic analysis of molecular data
- 2.4.1 Star phylogenies
- 2.4.2 Gene and genome duplications
- 2.4.3 Horizontal gene transfer
- 2.4.4 Gene loss and genome compactation
- 2.4.5 Mitochondrial genomes
- 2.4.6 The molecular clock
- 2.4.7 Controversial results
- 3 Metazoans enter the stage
- 3.1 Multicellularity
- 3.2 Competition and synergy, or molecules and organelles
- 3.3 Choanoflagellates, the closest relatives of animals
- 3.4 Late Precambrian fossils
- 3.4.1 Vendobionts or Vendian metazoans?
- 3.4.2 Doushantuo embryos
- 3.5 The Cambrian 'explosion'
- 4 Deep branches of the metazoan tree
- 4.1 The metazoa, our largest monophylum
- 4.1.1 Complexity and phylogeny
- 4.1.2 Germ layers and metazoan phylogeny
- 4.1.3 Dating early branchings
- 4.2 Metazoan phylogeny
- 4.2.1 Epitheliozoa and eumetazoa
- 4.2.2 Radiata versus Bilateria? A problem of symmetry and body axes
- 4.2.3 Two versus three germ layers
- 4.2.4 A cnidarian-deuterostome connection?
- 4.2.5 The basal branches of the eumetazoan tree
- 4.3 The sponges: Silicea,Homoscleromorpha,and Calcarea
- 4.3.1 Sponge paraphyly
- 4.3.2 Hexactinellida
- 4.3.3 Homoscleromorpha
- 4.3.4 Calcarea
- 4.4 Placozoa
- 4.5 Ctenophora
- 4.6 Cnidaria
- 5 The entangled phylogeny of the bilateria
- 5.1 The Bilateria
- 5.2 Urbilateria
- 5.3 The Main Branches
- 5.3.1 Nephrozoa
- 5.3.2 Protostomia
- 5.3.3 Platyzoa
- 5.3.4 Gnathifera
- 5.3.5 Spiralia=Trochozoa
- 5.3.6 Mesozoa
- 5.3.7 Lophotrochozoa
- 5.3.8 Eutrochozoa
- 5.3.9 Neotrochozoa
- 5.3.10 Ecdysozoa
- 5.3.11 Introverta=Cycloneuralia sensu Ahlrichs (1995)
- 5.3.12 Scalidophora=Cephalorhyncha
- 5.3.13 Vinctiplicata
- 5.3.14 Nematoida
- 5.3.15 Panarthropoda
- 5.3.16 Deuterostomia
- 5.3.17 Ambulacraria
- 5.4 Other phylogenetic hypotheses
- 5.4.1 Acoelomorpha
- 5.4.2 Plathelminthomorpha
- 5.4.3 Cycloneuralia
- 5.4.4 Parenchymia
- 5.4.5 Vermizoa
- 5.4.6 Schizocoelia=Teloblastica
- 5.4.7 Lophophorata
- 5.4.8 Articulata
- 5.4.9 Cyrtotreta
- 6 A gallery of the major bilaterian clades
- 6.1 Acoela
- 6.2 Nemertodermatida
- 6.3 Gastrotricha
- 6.4 Micrognathozoa
- 6.5 Syndermata
- 6.6 Gnathostomulida
- 6.7 Catenulida and Rhabditophora
- 6.7.1 Catenulida
- 6.7.2 Rhabditophora
- 6.8 Cycliophora
- 6.9 Ectoprocta
- 6.10 Entoprocta
- 6.11 Orthonectida
- 6.12 Rhombozoa
- 6.13 Nemertea
- 6.14 Phoronozoa
- 6.15 Mollusca
- 6.16 Annelida
- 6.17 Sipuncula
- 6.18 Priapulida
- 6.19 Loricifera
- 6.20 Kinorhyncha
- 6.21 Nematoda
- 6.22 Nematomorpha
- 6.23 Tardigrada
- 6.24 Onychophora
- 6.25 Arthropoda
- 6.25.1 Cambrian arthropod-like animals and stem-group Euarthropoda
- 6.25.2 Problems with segments and eyes
- 6.25.3 Pycnogonida
- 6.25.4 The main arthropod clades
- 6.25.5 Pancrustacea=Tetraconata versus Paradoxopoda=Myriochelata
- 6.25.6 Trilobita and Euthycarcinoida
- 6.25.7 Chelicerata
- 6.25.8 Myriapoda
- 6.25.9 Crustacea
- 6.25.10 Hexapoda
- 6.26 Chaetognatha
- 6.27 Xenoturbellida
- 6.28 Echinodermata
- 6.29 Hemichordata
- 6.30 Chordata
- 6.30.1 Cephalochordata
- 6.30.2 Urochordata
- 6.30.3 Vertebrata
- 7 The life cycle and its evolution
- 7.1 Cells and tissues
- 7.1.1 The cell as a building block of the animal body
- 7.1.2 Syncytia
- 7.1.3 Cell division
- 7.1.4 Apoptosis
- 7.1.5 Tissues
- 7.2 Reproduction and sexuality
- 7.2.1 Convergence and co-option
- 7.2.2 The one-cell bottleneck
- 7.2.3 Free cells, or unicellular metazoans
- 7.2.4 Asexual reproduction and regeneration
- 7.2.5 Gametes
- 7.3 Development
- 7.3.1 What is development?
- 7.3.2 Everything everywhere, or a principle of developmental inertia
- 7.3.3 Development for the development
- 7.3.4 Generic mechanisms of development
- 7.3.5 Parent-offspring competition and the developmental origins of individuality
- 7.3.6 Set-aside cells
- 7.3.7 The germ layers
- 7.3.8 Embryonic development
- 7.3.9 Growth
- 7.3.10 Morphogenesis and morphostasis
- 7.3.11 Fusion
- 7.4 The life cycle
- 7.4.1 Plasticity
- 7.4.2 Maximum life-cycle complexity
- 7.4.3 The life cycle as a unit of evolution
- 7.4.4 Periodization
- 7.4.5 The larva
- 7.5 Genes and animal development
- 7.5.1 Genotype-phenotype mapping
- 7.5.2 Developmental genes
- 7.5.3 Gene duplication, co-option, and paramorphism
- 8 The evolution of animal body architecture
- 8.1 The Body
- 8.1.1 The main body axis
- 8.1.2 Symmetry
- 8.1.3 The 'double animal'
- 8.1.4 From one to many axes: appendages and paramorphism
- 8.1.5 Segments
- 8.2 Organs
- 8.2.1 Organogenesis
- 8.2.2 Epithelia and epidermis
- 8.2.3 The cuticle
- 8.2.4 The nervous system
- 8.2.5 The digestive system
- 8.2.6 Body cavities
- 8.2.7 Respiratory organs
- 8.2.8 The circulatory system
- 8.2.9 The muscles
- 8.2.10 Skeletons and biomineralization
- 8.2.11 The excretory system and osmoregulatory devices
- 8.2.12 The immune system
- 8.2.13 Somatic structures involved in reproduction
- 9 The overall picture
- 9.1 Evolutionary novelties
- 9.1.1 Apomorphies versus innovations
- 9.1.2 Factoriality
- 9.1.3 Evolvability and constraints
- 9.2 Evolutionary trends
- 9.2.1 Evolutionary trends: facts or fiction?
- 9.2.2 Miniaturization
- 9.2.3 Ecological trends
- 9.3 Intercalary evolution
- 9.4 Patterned polyphenism
- 9.5 Hierarchies, or not
- 9.6 Summing up
- References
- Author index
- A
- B
- C
- D
- E
- F
- G
- H
- I
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- P
- Q
- R
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- X
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- Subject index
- A
- B
- C
- D
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- F
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