
Retinal Degenerative Diseases
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Content
- Intro
- Retinal Degenerative Diseases
- Preface
- About the Editors
- Contents
- Contributors
- Travel Awards
- Part I: AMD: Basic Mechanisms, Inflammation and Immunity
- Chapter 1: A Window to Innate Neuroimmunity: Toll-Like Receptor-Mediated Cell Responses in the Retina
- 1.1 Introduction
- 1.2 TLRs and Neuroimmunity
- 1.3 TLRs and Age-Related Macular Degeneration
- 1.4 Short Interfering RNA-Based Drugs Activate TLR3 Pathways
- References
- Chapter 2: Autoimmune Biomarkers in Age-Related Macular Degeneration: A Possible Role Player in Disease Development and Progression
- 2.1 Introduction
- 2.2 Evidence in Favor of a Role for Autoimmunity in AMD Pathogenesis
- 2.3 Preliminary Results from Our Research Support the Role of Autoimmunity in AMD
- 2.4 Experimental Framework and Future Directions
- References
- Chapter 3: Local Vs. Systemic Mononuclear Phagocytes in Age-Related Macular Degeneration and Their Regulation by CCL2-CCR2 and CX3CL1-CX3CR1 Chemokine Signalling
- 3.1 Introduction
- 3.2 Mononuclear Phagocytes Comprise a Heterogeneous Population of Systemic and Local Innate Immune Cells
- 3.3 Activation of Mononuclear Phagocytes Is Controlled by Signals from the Microenvironment
- 3.4 Evidence of the Involvement of Myeloid Cells in the Pathophysiology of AMD
- 3.5 The Identification of the Chemokine Receptor CX3CR1 as a Risk Factor for AMD
- 3.6 CCR2 and CX3CR1 Signalling Contribute Differentially to the Recruitment of Monocyte Subsets to the Retina and Also Control Local Microglia Responses
- 3.7 Future Directions
- References
- Chapter 4: Sublytic Membrane-Attack-Complex Activation and VEGF Secretion in Retinal Pigment Epithelial Cells
- 4.1 Introduction
- 4.2 Results
- 4.3 Discussion
- References
- Chapter 5: Complement Activation in Retinal Degeneration
- 5.1 Introduction
- 5.2 Methods
- 5.3 Results
- 5.4 Discussion
- References
- Chapter 6: Microglia in the Outer Retina and Their Relevance to Pathogenesis of Age-Related Macular Degeneration
- 6.1 Introduction
- 6.2 AMD Pathology in the Retinochoroidal Interface
- 6.3 Microglia-RPE Interactions in the Outer Retina
- 6.4 Therapeutic Perspectives
- References
- Chapter 7: Lutein or Zeaxanthin Supplementation Suppresses Inflammatory Responses in Retinal Pigment Epithelial Cells and Macrophages
- 7.1 Introduction
- 7.2 Materials and Methods
- 7.2.1 Materials
- 7.2.2 Experiments with Animals
- 7.2.3 Cell Culture and Treatments
- 7.3 Results
- 7.3.1 Supplementation with Lutein or Zeaxanthin to RPE Reduces Basal Level and LPS-Induced Secretion of IL-6 and IL-8
- 7.3.2 Lutein Supplementation to Primary Macrophage Cultures Suppresses LPS-Induced Secretion of IL-6 and TNF a
- 7.3.3 Macrophages Isolated from Lutein or Zeaxanthin Supplemented Mice Produce Less IL-6 and TNF a upon LPS Stimulation
- 7.4 Discussion
- References
- Chapter 8: Exploring the Potential Role of the Oxidant-Activated Transcription Factor Aryl Hydrocarbon Receptor in the Pathogenesis of AMD
- 8.1 Introduction
- 8.2 Oxidant Injury of RPE Cells Due to Cigarette Smoke
- 8.3 RPE Cellular Response to Oxidant Injury
- 8.4 Aryl Hydrocarbon Receptor
- 8.4.1 AhR Regulates Cellular Oxidative Stress Response
- 8.4.2 AhR Regulates Proteosomal Degradation
- 8.5 Potential Role for AhR in AMD Pathogenesis?
- References
- Chapter 9: Common Mechanisms for Separate Maculopathies?
- 9.1 Introduction
- 9.2 Shared Protein Networks in Common and Rare Maculopathies
- 9.3 Pathomechanisms of Maculopathies, Modifiable Risk Factors
- 9.4 The Role of the Extracellular Matrix in the Pathomechanism of Maculopathies
- References
- Chapter 10: The Role of Amyloid- b in Retinal Degeneration
- 10.1 Physiopathology of Age-Related Macular Degeneration
- 10.2 Amyloid- b Is a Component of Drusen
- 10.3 Amyloid- b Impairs RPE Cell Structure and Function
- 10.4 Amyloid- b Is Cytotoxic for the Neural Retina
- 10.5 Amyloid- b Is Proinflammatory in the Retina
- 10.6 Conclusions
- References
- Chapter 11: Molecule-Specific Imaging and Quantitation of A2E in the RPE
- 11.1 Introduction
- 11.2 Materials and Methods
- 11.2.1 RPE Tissue Preparation
- 11.2.2 MALDI Imaging
- 11.2.3 Quantitation of A2E
- 11.3 Results
- 11.3.1 Spatial Localization of A2E in Murine RPE
- 11.3.2 Quantitation of A2E
- 11.3.3 A2E Oxidation Sites
- 11.4 Discussion
- References
- Chapter 12: Autophagy in the Retina: A Potential Role in Age-Related Macular Degeneration*
- 12.1 Introduction
- 12.2 Molecular Events in the Autophagy Process
- 12.3 Signaling Mechanisms in Autophagy
- 12.4 Autophagy in the Neural Retina
- 12.5 Autophagy in the RPE
- 12.6 The Association Between Autophagy and AMD
- 12.7 Conclusion
- References
- Part II: Neuroprotection, Drugs and Novel Protective Therapies
- Chapter 13: Regeneration of Cone Outer Segments Induced by CNTF
- 13.1 Introduction
- 13.2 Materials and Methods
- 13.3 Results
- 13.3.1 Loss of COS in Early Stages of Cone Degeneration
- 13.3.2 CNTF Promotes COS Regeneration
- 13.4 Discussion
- References
- Chapter 14: Glucocorticoid-Dependent Mechanisms in Photoreceptor Survival
- 14.1 Introduction
- 14.2 Materials and Methods
- 14.3 Results
- 14.3.1 GRs in Control and Light-Exposed Retinas
- 14.3.2 Rhodopsin
- 14.3.3 Activation of Caspase-3
- 14.4 Discussion
- References
- Chapter 15: HDAC Inhibition Prevents Rd1 Mouse Photoreceptor Degeneration
- 15.1 Introduction
- 15.2 Materials and Methods
- 15.2.1 Animals
- 15.2.2 In Vitro Retinal Explant Cultures
- 15.2.3 HDAC Assay
- 15.2.4 TUNEL and Immunostaining
- 15.3 Results
- 15.3.1 Study of Expression and Activity of HDACs in wt and rd1 Retina
- 15.3.2 HDAC I/II Inhibitors Protect rd1 Photoreceptors Regulating PARP Activity
- 15.4 Discussion
- References
- Chapter 16: Neuroprotective Dose Response in RCS Rats Implanted with Microphotodiode Arrays
- 16.1 Introduction
- 16.2 Materials and Methods
- 16.2.1 Implantation of RCS Rats with MPAs
- 16.2.2 Light Dosing
- 16.2.3 Retinal Function Testing
- 16.2.4 Morphological Assessment of Photoreceptor Numbers
- 16.3 Results
- 16.3.1 Effects of Light Exposure on Retinal Function in Implanted RCS Rats
- 16.3.2 Effect of Light Exposure on Photoreceptor Survival in Implanted RCS Rats
- 16.4 Discussion
- References
- Chapter 17: Treatment with 670-nm Light Protects the Cone Photoreceptors from White Light-Induced Degeneration
- 17.1 Introduction
- 17.2 Materials and Methods
- 17.3 Results
- 17.3.1 Effects of 670-nm Light on Bright Light-Induced Photoreceptor Cell Death
- 17.3.2 670-nm Light Mitigates Loss of Outer Segments Following Photic Injury
- 17.3.3 Regulation of Cone Opsin Gene by 670-nm Light
- 17.3.4 670-nm Light Maintains Retinal Function Following Photic Injury
- 17.4 Discussion
- References
- Chapter 18: Dark-Rearing the rd10 Mouse: Implications for Therapy
- 18.1 Introduction
- 18.2 Methods
- 18.2.1 Mice
- 18.2.2 Electroretinography
- 18.2.3 Immunolabeling and Imaging
- 18.2.4 Quantitative Real-Time PCR
- 18.3 Results
- 18.3.1 Preservation of Function Until PNM3 in the DR-rd10 Mouse
- 18.3.2 Immunohistochemical Analysis of the Effect of DR on rd10 Retinal Remodeling
- 18.3.3 QrtPCR Analysis of Candidate Retinal Genes
- 18.4 Discussion
- References
- Chapter 19: Intravitreal Injection of Erythropoietin Glycosylation Analogs Does Not Protect Rod Photoreceptor Cells from Light-Induced Damage
- 19.1 Introduction
- 19.2 Materials and Methods
- 19.2.1 Light Exposure
- 19.2.2 Intravitreal Injection
- 19.2.3 ERG Recording and Outer Nuclear Layer Thickness Measurement
- 19.3 Results
- 19.4 Discussion
- References
- Chapter 20: Relieving Bottlenecks in RNA Drug Discovery for Retinal Diseases
- 20.1 Introduction
- 20.2 Materials and Methods
- 20.3 Variables in RDD
- 20.3.1 Agents of PTGS
- 20.3.2 Validating Appropriate Disease Target mRNAs
- 20.3.3 Target mRNA Structure and Determinations of Accessibility
- 20.3.4 Screening Large Numbers of PTGS Agents to Identify a Lead Candidate
- 20.3.5 Optimizing the Lead Candidate
- 20.3.6 The Vector, PTGS Expression Construct, and Animal Testing
- 20.3.7 Appropriate Targets (Human)
- 20.4 Conclusions
- References
- Chapter 21: On Further Development of Barrier Modulation as a Technique for Systemic Ocular Drug Delivery
- 21.1 Introduction
- 21.2 Therapeutic Delivery Across the iBRB
- 21.3 The oBRB and Its Potential in Barrier Modulation
- 21.4 Closing Remarks
- References
- Chapter 22: An Application for Mammalian Optic Nerve Repair by Fish Regeneration-Associated Genes
- 22.1 Introduction
- 22.2 IGF-I
- 22.3 nNOS
- 22.4 TG
- 22.5 Purpurin
- 22.6 Future Study for Overcoming Mammalian CNS Injury
- References
- Chapter 23: The Mechanism of Fenretinide (4-HPR) Inhibition of b -carotene Monooxygenase 1. New Suspect for the Visual Side Effects of Fenretinide
- 23.1 Introduction
- 23.2 Materials and Methods
- 23.2.1 Constructs
- 23.2.2 Protein Expression and Enzyme Assays
- 23.2.3 HPLC Analysis of Retinoids and Carotenoids
- 23.2.4 Synthesis of Fenretinine, 15-[(4-Hydroxyphenyl)Amino]Retinal (1)
- 23.2.5 Tertiary Structure Modeling and Molecular Docking
- 23.3 Results
- 23.3.1 Fenretinide is a Potent Inhibitor of BCMO1
- 23.3.2 Fenretinide Demonstrates Noncompetitive Inhibition Behavior
- 23.3.3 Fenretinide Does Not Inhibit Catalytic Activity of BCMO1?337-346 Mutant
- 23.3.4 Amine Analog of Fenretinide (Fenretinine) Is Not an Inhibitor of BCMO1
- 23.4 Discussion
- References
- Part III: Gene Therapy
- Chapter 24: Gene Augmentation Trials Using the Rpe65-Deficient Dog: Contributions Towards Development and Refinement of Human Clinical Trials
- 24.1 Introduction
- 24.2 Gene Therapy Proof-of-Principle Trials in Rpe65-Deficient Dogs
- 24.3 Phase I/II Clinical Trials in LCAII Patients
- 24.4 Safety and Efficacy of Treatment of the Second Eye of Rpe65-Deficient Dogs
- References
- Chapter 25: Gene Therapy Restores Missing Cone-Mediated Vision in the CNGA3 -/- Mouse Model of Achromatopsia
- 25.1 Introduction
- 25.2 Materials and Methods
- 25.2.1 rAAV Production Vectors and Subretinal rAAV Injections
- 25.2.2 Electrophysiological Analysis
- 25.2.3 Immunohistochemistry
- 25.2.4 Behavior
- 25.3 Results
- 25.4 Discussion
- References
- Chapter 26: Functional Rescue of P23H Rhodopsin Photoreceptors by Gene Delivery
- 26.1 Introduction
- 26.2 Materials and Methods
- 26.2.1 Animals
- 26.2.2 Transient Transfection of HeLa Cells and Immunohistochemistry
- 26.2.3 ERG
- 26.2.4 Histology
- 26.3 Results
- 26.3.1 Functional Preservation of P23H RHO Photoreceptors as a Result of Overexpression of Mouse RHO 301
- 26.3.2 Functional Preservation of P23H RHO Photoreceptors as a Result of Increased Expression of Human BiP/Grp78
- 26.3.3 Preservation of Retinal Integrity in P23H RHO Rats as a Result of Overexpression of Human BiP/GRP78
- 26.3.4 Elevation of BiP Protein Level Does Not support the Trafficking of P23H RHO to the Cell Membrane
- 26.3.5 Functional Preservation of P23H RHO Photoreceptors as a Result of Overexpression of HSF1
- 26.4 Discussion
- References
- Chapter 27: Gene Delivery of Wild-Type Rhodopsin Rescues Retinal Function in an Autosomal Dominant Retinitis Pigmentosa Mouse Model
- 27.1 Introduction
- 27.2 Materials and Methods
- 27.2.1 RHO301 Gene Cloning
- 27.2.2 Experiment with Animal Models
- 27.2.3 Electroretinography (ERG)
- 27.2.4 Histological Analysis for the Outer Nuclear Layer
- 27.3 Results
- 27.3.1 Expression of AAV-Delivered RHO301
- 27.3.2 Retinal Structure Integrity in AAV Gene-Delivered P23H Mice
- 27.3.3 Rescued Retinal Function Observed in AAV-RHO301-Injected P23H Eyes
- 27.4 Discussion
- References
- Chapter 28: Retinal Degeneration and Cellular Suicide
- 28.1 Programmed Cell Death Pathways
- 28.2 Cell Death in Inherited Retinal Dystrophies
- 28.3 Cell Death in Retinal Damage Models
- 28.4 Retina Rescue by Blocking PCD
- 28.5 Looking into the Future
- References
- Chapter 29: Suppression of rds Expression by siRNA and Gene Replacement Strategies for Gene Therapy Using rAAV Vector
- 29.1 Introduction
- 29.2 Materials and Methods
- 29.2.1 Cell Transfection
- 29.2.2 RNA Isolation and Semiquantitative Real-Time PCR
- 29.2.3 AAV Production
- 29.2.4 Subretinal Injection
- 29.2.5 Electroretinogram
- 29.2.6 Statistical Analysis
- 29.3 Results
- 29.3.1 Synthetic siRNAs Targeted to rds Reduces Transduction In Vitro in HEK-293 Cells
- 29.3.2 Effect of siRNA Directed to rds In Vivo in Photoreceptors by rAAV-5 Vector
- 29.3.3 Construction of rds Resistant to siRNA
- 29.3.4 Proof of Principal for Combination Therapy for rds Using AAV Vector in Photoreceptors In Vivo
- 29.4 Discussion
- References
- Chapter 30: Silencing the Expression of CTRP5 / C1QTNF5 and ELOVL4 Genes by Small Interfering RNA
- 30.1 Introduction
- 30.2 Materials and Methods
- 30.2.1 siRNA Designing
- 30.2.2 Cell Culture and Transfection of siRNA
- 30.2.3 Quantitative Real-Time PCR
- 30.2.4 Immunofluorescence Analysis of Transfected Cos-7 Cells
- 30.3 Results
- 30.3.1 siRNA-Mediated Suppression of ELOVL4 mRNA
- 30.3.2 siRNA Mediated Knockdown of CTRP5/Ctrp5
- 30.4 Discussion
- References
- Chapter 31: Gene Therapy Strategies for Usher Syndrome Type 1B
- 31.1 Introduction
- 31.2 MYO7A Gene
- 31.3 Myo7a -Mutant Mice
- 31.4 Lentivirus-Mediated Gene Therapy
- 31.5 AAV-Mediated Gene Therapy
- 31.6 Conclusion: The Best Strategy for Usher 1B Gene Therapy?
- References
- Part IV: Blood Vessels, Angiogenesis, and Neovascularization
- Chapter 32: Neovascularization: Ocular Diseases, Animal Models and Therapies
- 32.1 Introduction
- 32.2 Neovascular Ocular Diseases
- 32.2.1 Age-Related Macular Degeneration
- 32.2.2 Retinopathy of Prematurity
- 32.2.3 Diabetic Retinopathy
- 32.3 Animal Models
- 32.3.1 Choroidal Neovascularization
- 32.3.2 Vldlr
- 32.3.3 Vascular Endothelial Growth Factor
- 32.3.4 Ins2 Akita
- 32.3.5 Ins2 Akita VEGF
- 32.3.6 Oxygen Induced Retinopathy
- 32.4 Therapeutic Treatment of Ocular Neovascular Diseases
- 32.4.1 Targeting Pathology and Angiogenic Pathways
- 32.4.2 Targeting VEGF-Dependent Pathway
- 32.4.3 Nanomedicine
- 32.4.4 Regenerative Medicine
- 32.5 Conclusion
- References
- Chapter 33: Retinal Neovascular Disorders: Mouse Models for Drug Development Studies
- 33.1 Introduction
- 33.2 Proliferative Diabetic Retinopathy
- 33.3 Retinopathy of Prematurity
- 33.4 Age-Related Macular Degeneration
- 33.5 Genetic Mouse Models for Neovascularization
- 33.6 Nongenetic Models for Neovascularization
- 33.7 Use of Mouse Models for Neovascularization in Preclinical Drug Testing
- 33.8 Conclusion
- References
- Chapter 34: A Review and Update on the Molecular Basis of Pathogenesis of Sorsby Fundus Dystrophy
- 34.1 Introduction
- 34.2 Clinical Manifestations of SFD and Therapeutic Intervention
- 34.3 Mutation Spectrum of TIMP3 in SFD
- 34.4 Advances in the Elucidation of the Pathogenesis of SFD
- 34.4.1 Molecular Characteristics of Mutant TIMP3
- 34.4.2 Clues from Animal Models
- 34.4.3 Molecular Mechanisms of Angiogenesis in SFD
- 34.5 TIMP3 and AMD
- References
- Chapter 35: The Importance of Hypoxia-Regulated, RPE-Targeted Gene Therapy for Choroidal Neovascularization
- 35.1 Introduction
- 35.2 Constitutive vs. Regulated Expression
- 35.3 RPE-Specific Promoters
- 35.4 Hypoxia-Regulated Expression
- 35.5 Effectiveness of Endostatin
- 35.6 Conclusions
- References
- Chapter 36: What Is the Role of CCR3 in Choroidal Neovascularization?
- 36.1 Introduction
- 36.2 Materials and Methods
- 36.2.1 Animals and Subretinal Injection of Matrigel
- 36.2.2 Visualization of Blood Vessels and Measurement of CNV
- 36.3 Results
- 36.3.1 Development of CNV in the Matrigel Model
- 36.3.2 CCR3 Targeting and CNV Development in Rats and Mice
- 36.4 Discussion
- References
- Chapter 37: Intermittent But Not Constant High Glucose Induces ER Stress and Inflammation in Human Retinal Pericytes
- 37.1 Introduction
- 37.2 Materials and Methods
- 37.2.1 Materials
- 37.2.2 Cell Culture
- 37.2.3 Western Blot Analysis
- 37.2.4 Quantification of MCP-1 Secretion in Pericytes
- 37.2.5 Statistical Analysis
- 37.3 Results
- 37.3.1 High Glucose Suppresses GRP78 Expression in HRP
- 37.3.2 Intermittent But Not Constant High Glucose Activates ATF4/CHOP and Increases MCP-1 Secretion in HRP
- 37.3.3 Inhibition of ER Stress by Chemical Chaperones Alleviates Inflammatory Cytokine Expression in HRP Exposed to Intermittent High Glucose
- 37.4 Discussion
- References
- Chapter 38: Regulation of Retinal Vascular Permeability by Betacellulin
- 38.1 Introduction
- 38.2 Betacellulin: Structure and Expression
- 38.3 Biological Function of BTC
- 38.4 Betacellulin Induces Angiogenesis
- 38.5 Role of Betacellulin in the Retina in Diabetes
- 38.6 Future Vision
- References
- Chapter 39: Presence of RPE-Produced VEGF in a Timely Manner Is Critical to Choroidal Vascular Development
- 39.1 Introduction
- 39.2 Methods
- 39.2.1 Animal Experiments
- 39.2.2 Quantification of Choroidal Vascular Density
- 39.3 Results
- 39.3.1 Choroidal Vascular Density
- 39.3.2 Retinal Integrity
- 39.4 Discussion
- References
- Chapter 40: Vasohibin-1 and Retinal Pigment Epithelium
- 40.1 Introduction
- 40.2 Methods
- 40.2.1 RPE Preparation
- 40.2.2 Real-Time RPE Impedance Analysis and MTS Assay
- 40.2.3 Extraction of mRNA, cDNA Generation, Reverse-Transcriptase, and Real-Time Polymerase Chain Reaction (RT-PCR)
- 40.2.4 Western Blot Analysis for Vasohibin-1 and VEGF
- 40.3 Results
- 40.3.1 Vasohibin-1 Expression
- 40.3.2 RPE Dynamics and Proliferation by Vasohibin-1
- 40.4 Discussion
- References
- Part V: Genotype/Phenotype
- Chapter 41: Polymorphic Variation of RPGRIP1L and IQCB1 as Modifiers of X-Linked Retinitis Pigmentosa Caused by Mutations in RPGR
- 41.1 Introduction
- 41.2 Materials and Methods
- 41.2.1 Patients and Clinical Assessment
- 41.2.2 Genotyping Candidate Modifier Loci
- 41.2.3 Data Analysis
- 41.3 Results
- 41.3.1 Phenotypic Heterogeneity Between and Within Families
- 41.3.2 Modifier SNPs
- 41.4 Discussion
- References
- Chapter 42: RPGRIP1 and Cone-Rod Dystrophy in Dogs
- 42.1 Introduction
- 42.2 Focus on the RPGRIP1 : What Makes It Special?
- 42.3 Characterization of the RPGRIP1-Associated Protein Network
- 42.3.1 RPGRIP1 Is a Component of the Transport Network for Cilia Assembly
- 42.3.2 RPGRIP1 Involvement in Regulating Cytoskeleton Dynamics and Ciliogenesis
- 42.3.3 Components of Molecular Networks Regulating Cellular Transport and Cytoskeleton Dynamics Show Connection with Visual Pathway
- 42.4 Dogs with Retinal Degeneration Show Significant Phenotypic Variation with RPGRIP1 Mutation Ins44
- References
- Chapter 43: High-Throughput Approaches for the Genetic Diagnosis of Retinal Dystrophies
- 43.1 Introduction
- 43.2 Direct Molecular Diagnosis of Retinal Dystrophies
- 43.2.1 Mutation Screening Chips
- 43.2.2 Resequencing Chips
- 43.2.3 Next-Generation Sequencing of Target Genes
- 43.3 Indirect Molecular Diagnosis of Retinal Dystrophies
- 43.3.1 Homozygosity Mapping
- 43.3.2 Cosegregation SNP-Chips
- 43.4 Optimized Multitiered Strategy for Efficient Molecular Diagnosis
- 43.5 Future Venues and Concluding Remarks
- References
- Chapter 44: Genes and Mutations in Autosomal Dominant Cone and Cone-Rod Dystrophy
- 44.1 Introduction
- 44.2 Materials and Methods
- 44.2.1 Patients and Clinical Examinations
- 44.2.2 Genetic Analyses
- 44.3 Results
- 44.3.1 Mutation Spectrum
- 44.4 Discussion
- References
- Chapter 45: The Power of Homozygosity Mapping: Discovery of New Genetic Defects in Patients with Retinal Dystrophy
- 45.1 Introduction
- 45.1.1 Homozygosity Mapping
- 45.2 The Efficacy of Homozygosity Mapping in Different Types of Families and Populations
- 45.2.1 Consanguineous vs. Nonconsanguineous Families
- 45.2.2 Successfulness Based on Population Composition
- 45.3 Conclusions
- 45.3.1 Strengths, Limitations, and Future Perspectives of Homozygosity Mapping
- References
- Chapter 46: Development and Validation of a Canine-Specific Profiling Array to Examine Expression of Pro-apoptotic and Pro-survival Genes in Retinal Degenerative Diseases
- 46.1 Introduction
- 46.2 Materials and Methods
- 46.2.1 Development of the Canine-Specific qRT-PCR Array
- 46.2.2 Validation of the qRT-PCR Array Using Madin-Darby Canine Kidney (MDCK) Cells
- 46.2.2.1 Cell Culture
- 46.2.2.2 Assessment of Cellular Viability
- 46.2.2.3 qRT-PCR Analysis
- 46.3 Results
- 46.4 Discussion and Conclusions
- References
- Chapter 47: The Chromosome 10q26 Susceptibility Locus in Age-Related Macular Degeneration
- 47.1 Introduction
- 47.2 Unravelling the Genetic Association Locus in Chromosomal Region 10q26
- 47.3 The Contribution of ARMS2 to the AMD Association in Chromosomal Region 10q26
- 47.4 The Potential Role of HTRA1 in AMD
- References
- Chapter 48: Congenital Stationary Night Blindness: Mutation Update and Clinical Variability
- 48.1 Introduction
- 48.2 Methods
- 48.2.1 Subjects
- 48.2.2 Analyses
- 48.2.2.1 Genetic Analysis
- 48.2.2.2 Statistical Analysis
- 48.3 Results
- 48.3.1 Genetic Analysis
- 48.3.2 Clinical Variability
- 48.4 Discussion
- 48.5 Conclusions
- References
- Chapter 49: Serum Biomarkers and Trafficking Defects in Peripheral Tissues Reflect the Severity of Retinopathy in Three Brothers Affected by Choroideremia
- 49.1 Introduction
- 49.2 Methods
- 49.2.1 Characterization of the Patient Population
- 49.2.2 Confocal Microscopy and FACS Analysis on Phagocytosing CD14+ Monocyte Population from CHM Patients and Controls
- 49.3 Results
- 49.3.1 Clinical Variation between the Members of the CHM Affected Family
- 49.3.2 Clinical and Functional Variability Between the Individuals Carrying the Same CHM Mutation
- 49.4 Discussion
- References
- Part VI: New Animal Models of Retinal Degeneration
- Chapter 50: Translational Vision Research Models Program
- 50.1 Introduction
- 50.2 Materials and Methods
- 50.2.1 Origins of Mice and Husbandry
- 50.2.2 Clinical Evaluation and Electroretinography
- 50.2.3 Genetic Mapping and Mutational Analysis
- 50.2.4 Histological Analysis
- 50.3 Results and Discussion
- 50.3.1 A New Mutation in Phosphodiesterase 6A, cGMP-Specific, Rod, Alpha (Pde6a)
- 50.3.2 A New Mutation in Tubby-Like Protein 1
- 50.3.3 A New Mutation in Rhodopsin
- 50.4 Summary
- References
- Chapter 51: Zebrafish: A Model System for the Investigation of Novel Treatments for Retinal Disease
- 51.1 Introduction
- 51.2 Morphological and Embryological Features
- 51.3 Zebrafish Genetic Resources
- 51.3.1 Genetic Screens
- 51.3.2 Mutant Strain Repositories
- 51.4 Functional Assessment in Zebrafish
- 51.5 Drug Discovery
- 51.6 Conclusion
- References
- Chapter 52: Retinal Degeneration in the Fly
- 52.1 Introduction
- 52.2 The Compound Eye and Phototransduction
- 52.3 Genetic Screens Identify Retinal Degeneration Loci
- 52.4 Retinal Degenerations in Flies and Humans
- 52.5 Summary
- References
- Chapter 53: Looking into Eyes: Rhodopsin Pathologies in Drosophila
- 53.1 Introduction
- 53.2 The Dark Side of Rhodopsin
- 53.3 Pathogenic Mechanisms Underlying RD in Drosophila
- 53.3.1 Abnormalities in the PT Cascade
- 53.3.2 Altered Rh1 Endocytosis and Autophagy
- 53.3.3 Impaired Rh1 Maturation, Trafficking, and Proteasomal Clearance
- 53.3.4 Pathways to Cell Death in RD
- 53.4 Conclusions
- References
- Chapter 54: Müller Glia as a Source of Neuronal Progenitor Cells to Regenerate the Damaged Zebrafish Retina
- 54.1 Models of Retinal Damage in Zebrafish
- 54.2 Regeneration of the Light-Damaged Zebrafish Retina
- 54.3 Induction of Müller Glial Proliferation in the Light-Damaged Zebrafish Retina
- 54.4 Transcription Factors Required for Maximal Müller Glial Cell Proliferation
- 54.5 Proteins That Are Required for Neuronal Progenitor Cell Proliferation
- 54.6 Future Directions
- References
- Chapter 55: The Genetics of Outer Segment Morphogenesis in Zebrafish
- 55.1 Introduction
- 55.1.1 Photoreceptor Outer Segments
- 55.1.2 Significance of Photoreceptor Outer Segments
- 55.1.3 Study of Photoreceptor Outer Segment Morphogenesis in Zebrafish
- 55.2 Zebrafish Mutant Screens
- 55.3 Zebrafish Outer Segment Mutants
- 55.3.1 Mutations in Genes Encoding Phototransduction Proteins
- 55.3.2 Mutations in Intracellular Trafficking Genes
- 55.3.2.1 Intraflagellar Transport Particle B proteins
- 55.3.2.2 Microtubule-Dependent Molecular Motors
- 55.3.2.3 Membrane Transport
- 55.3.3 Mutations in Genes Encoding Structural Proteins
- 55.3.4 Mutations in Genes Encoding Transcription Factors
- 55.3.5 Other Outer Segment Mutants
- 55.4 Conclusion
- References
- Chapter 56: Factor XIIIA Induction in the Retina and Optic Nerve After Optic Nerve Lesion in Goldfish
- 56.1 Introduction
- 56.2 Materials and Methods
- 56.2.1 Experiment with Animals
- 56.2.2 Cloning of Goldfish Neural Factor XIIIA
- 56.2.3 In Situ Hybridization
- 56.2.4 Retinal Explant Culture
- 56.3 Results
- 56.3.1 Changes in Factor XIIIA Gene Expression in the Retina and Optic Nerve After Optic Nerve Injury
- 56.3.2 Recombinant Factor XIIIA Protein Clearly Induced Neurite Outgrowth
- 56.4 Discussion
- References
- Part VII: Analysis of Retinal Degeneration by Imaging and Functional Testing
- Chapter 57: Imaging the Photoreceptor Mosaic with Adaptive Optics: Beyond Counting Cones
- 57.1 Introduction
- 57.2 Materials and Methods
- 57.3 Results
- 57.3.1 Case 1
- 57.3.2 Case 2
- 57.3.3 Case 3
- 57.4 Discussion
- References
- Chapter 58: Baseline Imaging Reveals Preexisting Retinal Abnormalities in Mice
- 58.1 Introduction
- 58.2 Materials and Methods
- 58.2.1 Animal Models
- 58.2.2 Imaging Procedures
- 58.2.3 Histology
- 58.3 Results
- 58.4 Discussion
- References
- Chapter 59: Correlation Between Spectral Domain OCT Retinal Nerve Fibre Layer Thickness and Multifocal Pattern Electroretinogram in Advanced Retinitis Pigmentosa
- 59.1 Introduction
- 59.2 Materials and Methods
- 59.2.1 Study Population
- 59.2.2 Electrophysiological Recordings
- 59.2.3 Retinal Nerve Fibre Layer Imaging
- 59.3 Results
- 59.3.1 Basic Characteristics of Study Cohort
- 59.3.2 Inner Retina Structure-Function Relation
- 59.4 Discussion
- References
- Chapter 60: Imaging Human Postmortem Eyes with SLO and OCT
- 60.1 Introduction
- 60.2 Materials and Methods
- 60.2.1 Tissue Preparation
- 60.2.2 Bright-Field Macroscopic Imaging
- 60.2.3 Scanning Laser Ophthalmoscope
- 60.2.4 Optical Coherence Tomography
- 60.3 Results
- 60.3.1 Normal Retina
- 60.3.2 Macular Hole
- 60.3.3 RPE Detachment
- 60.3.4 AMD Retina
- 60.3.5 RP Retina
- 60.4 Discussion
- References
- Chapter 61: In Vivo Assessment of Rodent Retinal Structure Using Spectral Domain Optical Coherence Tomography
- 61.1 Introduction
- 61.2 Materials and Methods
- 61.2.1 Animals
- 61.2.2 Retinal Imaging
- 61.2.3 Histology
- 61.3 Results
- 61.4 Discussion
- References
- Chapter 62: Rod Photoreceptor Temporal Properties in Retinal Degenerative Diseases
- 62.1 Introduction
- 62.2 Materials and Methods
- 62.2.1 Subjects
- 62.2.2 Evaluation of the Rod Inactivation Kinetics Using Paired-Flash ERG
- 62.3 Results
- 62.3.1 Rod Photoresponse Recovery Kinetics in RDDs
- 62.3.2 T sat Is Correlated with Dark-Adapted Rod Amplitude in adRP
- 62.4 Discussion
- References
- Chapter 63: ERG Critical Flicker Frequency Assessment in Humans
- 63.1 Introduction
- 63.2 Materials and Methods
- 63.2.1 Subject Selection and Preparation
- 63.2.2 ERG Protocol
- 63.3 Results
- 63.3.1 Scotopic CFF
- 63.3.2 Photopic CFF
- 63.4 Discussion
- References
- Part VIII: Mechanisms of Retinal Degeneration
- Chapter 64: Biology of Retinoschisin
- 64.1 Introduction
- 64.2 RS1 Gene and Protein
- 64.3 RS1 Interactions
- 64.4 X-Linked Retinoschisis Mutations
- 64.5 Clinical Pathology
- 64.6 Molecular Pathology
- 64.7 Prospects for Gene Therapy
- References
- Chapter 65: Transcriptome Analyses to Investigate the Pathogenesis of RNA Splicing Factor Retinitis Pigmentosa
- 65.1 Introduction
- 65.2 The Retinal Pigment Epithelium Is the Primary Tissue Affected by Mutations in the Pre-mRNA Processing Factors 3, 8, and 31
- 65.3 Identifying Aberrantly Spliced Transcripts Using Next-Generation Sequencing
- 65.3.1 Next-Generation Sequencing Platforms
- 65.3.2 An Overview of RNA-Seq
- 65.3.3 Bioinformatic Analysis of RNA-Seq Data
- 65.4 RNA-Seq Analyses of RNA Splicing Factor Mutant Mice
- 65.5 Future Experimental Approaches
- References
- Chapter 66: The Role of the X-linked Retinitis Pigmentosa Protein RP2 in Vesicle Traffic and Cilia Function
- 66.1 Introduction
- 66.2 RP2 Structure
- 66.3 RP2 Cilia Localisation and Function
- 66.4 New RP2 Interaction Partners
- 66.5 Conclusions
- References
- Chapter 67: Caenorhabditis elegans as a Model Organism for Ciliopathies and Related Forms of Photoreceptor Degeneration
- 67.1 Introduction
- 67.2 C. elegans BBS Proteins Play a Role in IFT Transport
- 67.3 BBS Proteins Function in RPE Cells
- 67.4 C. elegans Have Phototransduction Components
- 67.5 Is C. elegans a Good Animal Model to Study Photoreceptor Degeneration?
- References
- Chapter 68: Towards a Pathological Mechanism for IMPDH1-Linked Retinitis Pigmentosa
- 68.1 Introduction
- 68.2 IMPDH and the Retina
- 68.3 IMPDH Structure and Function
- 68.4 Retinal Splice Variants
- 68.5 IMPDH and Translation
- 68.6 Summary
- References
- Chapter 69: Calpain and Photoreceptor Apoptosis
- 69.1 Introduction
- 69.2 Calpain Activation
- 69.3 Light Ablation Model
- 69.4 Systemic Delivery of Calpain Inhibitors
- 69.5 Conclusion
- References
- Chapter 70: Ceramide Signaling in Retinal Degeneration
- 70.1 Introduction
- 70.2 An Overview of Ceramide Metabolism in the Cell
- 70.3 Ceramide in Photoreceptor Apoptosis
- 70.4 Ceramide Signaling in RPE Cell Death
- 70.5 Conclusion
- References
- Chapter 71: Endoplasmic Reticulum-Associated Degradation (ERAD) of Misfolded Glycoproteins and Mutant P23H Rhodopsin in Photoreceptor Cells
- 71.1 The Endoplasmic Reticulum: Protein Folding and Quality Control
- 71.2 Recognition Misfolded Proteins in the ER
- 71.3 From Quality Control to Dislocation for ERAD
- 71.4 Cytosolic Events of ERAD
- 71.5 ERAD in Retinitis Pigmentosa
- References
- Chapter 72: Protein Misfolding and Potential Therapeutic Treatments in Inherited Retinopathies
- 72.1 Introduction
- 72.2 Protein Misfolding in Photoreceptor Cells
- 72.3 Therapeutic Strategies for Inhibiting Protein Aggregation and Related Toxicity
- 72.3.1 Inhibition of Conformational Shift
- 72.3.2 Enhancing Chaperone Activities
- 72.3.3 Inhibition of Factors Mediating Cell Toxicity
- 72.3.4 Gene Therapy
- 72.4 Conclusions
- References
- Chapter 73: Development of a Cellular Model of Rod Opsin Retinitis Pigmentosa
- 73.1 Introduction
- 73.2 Materials and Methods
- 73.2.1 Generation of Expression Vectors
- 73.2.2 Western Blotting
- 73.2.3 TUNEL Assay Detection of Apoptosis
- 73.2.4 Immunofluorescence
- 73.2.5 Gene Expression Analysis
- 73.3 Results
- 73.3.1 P23H Opsin Protein Has Altered Intracellular Trafficking
- 73.3.2 Activation of UPR and Autophagy
- 73.4 Discussion
- References
- Chapter 74: A Brief Account of Rho GTPases in Retinal Physiology and Pathophysiology
- 74.1 Introduction
- 74.2 Rho GTPases in Retinal Development
- 74.3 Rho GTPases and the Photoreceptor Cytoskeleton
- 74.4 Rho GTPases in Photoreceptor Degeneration and Survival
- 74.5 Conclusion
- References
- Chapter 75: Molecular Clues to Bothnia-Type Retinal Dystrophy
- 75.1 Introduction
- 75.2 Materials and Methods
- 75.2.1 Protein Expression, Purification, and Crystallization
- 75.2.2 Illumination of 11- cis -Retinal
- 75.3 Results
- 75.3.1 The Structure Determination of CRALBP WT and R234W
- 75.3.2 Photoisomerization of 11- cis -Retinal
- 75.4 Discussion
- References
- Chapter 76: A Novel Missense Mutation in Both OPN1LW and OPN1MW Cone Opsin Genes Causes X-Linked Cone Dystrophy (XLCOD5)
- 76.1 Introduction
- 76.2 Materials and Methods
- 76.2.1 Ophthalmic Assessment
- 76.2.2 Molecular Genetic Analysis
- 76.2.3 Immunoblotting and Immunocytochemistry
- 76.3 Results
- 76.3.1 Phenotype of the XLCOD5 Family
- 76.3.2 Molecular Genetic Analysis
- 76.4 Discussion
- References
- Chapter 77: A Potential Cytosolic Function of Bestrophin-1
- 77.1 Introduction
- 77.2 Best's Vitelliforme Macular Dystrophy
- 77.3 The Function of Bestrophin-1
- 77.4 The Localization of Bestrophin-1
- 77.5 Cytoplasmic Function of Bestrophin-1
- References
- Chapter 78: Modeling the Structural Consequences of BEST1 Missense Mutations
- 78.1 Introduction
- 78.2 Materials and Methods
- 78.2.1 Topology Prediction
- 78.2.2 Prediction of Protein Structure
- 78.3 Results
- 78.3.1 Canine Bestrophin-1 Topology
- 78.3.2 Comparative Protein Modeling
- 78.4 Discussion
- References
- Chapter 79: Microglial Activation and Transcriptomic Changes in the Blue Light-Exposed Mouse Retina
- 79.1 Introduction
- 79.2 Materials and Methods
- 79.2.1 Blue Light Exposure of MacGreen Mice
- 79.2.2 Retinal Cross Sections and Whole Mounts
- 79.2.3 RNA Isolation and Reverse Transcription
- 79.2.4 DNA Microarrays
- 79.2.5 Quantitative Real-Time PCR
- 79.3 Results
- 79.3.1 Microglia Accumulate in Blue Light-Induced Retinal Lesions
- 79.3.2 Transcriptomic Changes in the Blue Light-Exposed Retina
- 79.4 Discussion
- References
- Chapter 80: Overexpression of ROM-1 in the Cone-Dominant Retina
- 80.1 Introduction
- 80.2 Materials and Methods
- 80.2.1 Generation of ROM-1 Transgenic Mice
- 80.2.2 Gel Electrophoresis and Western Blot Analysis
- 80.2.3 Electroretinography (ERG)
- 80.2.4 Electron Microscopy
- 80.3 Results
- 80.3.1 Expression of ROM-1 Protein in Transgenic Mice
- 80.3.2 Overexpression of ROM-1 Exerts Negative Effects on Cone Function and Structure
- 80.4 Discussion
- References
- Chapter 81: Analysis of the RPE Sheet in the rd10 Retinal Degeneration Model
- 81.1 Introduction
- 81.2 Methods
- 81.2.1 RPE Flatmount Technique
- 81.2.2 ZO-1 Staining
- 81.2.3 Imaging
- 81.2.4 Statistics
- 81.3 Results
- 81.4 Discussion
- 81.5 Conclusions
- References
- Chapter 82: Networks Modulating the Retinal Response to Injury: Insights from Microarrays, Expression Genetics, and Bioinformatics
- 82.1 Introduction
- 82.2 Gene Expression After Retinal Injury
- 82.3 Expression Genetics of Retinal Injury Genes
- 82.4 Bioinformatics Can Predict Candidate Modulators
- 82.5 Predicted Networks Require Validation
- 82.6 Conclusion
- References
- Chapter 83: Mislocalization of Oligomerization-Incompetent RDS is Associated with Mislocalization of Cone Opsins and Cone Transducin
- 83.1 Introduction
- 83.2 Materials and Methods
- 83.2.1 Construction of the Transgene
- 83.2.2 Antibodies and Immunohistochemistry
- 83.3 Results
- 83.3.1 OS Proteins are Normally Localized in COP-T/nrl - / -
- 83.3.2 GNAT2 is Mislocalized in COP-T/WT
- 83.4 Discussion
- References
- Chapter 84: HSP70 Gene Expression in the Zebrafish Retina After Optic Nerve Injury: A Comparative Study Under Heat Shock Stresses
- 84.1 Introduction
- 84.2 Materials and Methods
- 84.2.1 Animals and Treatment
- 84.2.2 RNA Isolation and RT-PCR
- 84.2.3 Tissue Preparation
- 84.2.4 Immunohistochemistry
- 84.2.5 In Situ Hybridization
- 84.3 Results
- 84.3.1 The Expression of HSP70 and HSF-1 in the Zebrafish Retina After ONI
- 84.3.2 The Expression of HSP70 and HSF-1 in the Zebrafish Retina After Heat Shock
- 84.4 Discussion
- References
- Part IX: Retinal Development, Physiology, Cell and Molecular Biology
- Chapter 85: Restoration of Retinal Development in Vsx2 Deficient Mice by Reduction of Gdf11 Levels
- 85.1 Introduction
- 85.2 Materials and Methods
- 85.2.1 Animals
- 85.2.2 Histology and In Situ Hybridization
- 85.3 Results
- 85.4 Discussion
- References
- Chapter 86: The Different Functions of Norrin
- 86.1 Introduction
- 86.2 Norrie Disease
- 86.3 Norrin
- 86.4 Angiogenic Properties of Norrin
- 86.5 Neuroprotective Properties of Norrin
- 86.6 The Role of Norrin in Reproduction and Development
- References
- Chapter 87: Roles of Homeobox Genes in Retinal Ganglion Cell Differentiation and Axonal Guidance
- 87.1 Introduction
- 87.2 Brn-3 Genes
- 87.3 Dlx Genes
- 87.4 Vax Genes
- 87.5 Islet Genes
- 87.6 Summary
- References
- Chapter 88: Unraveling the Molecular Mystery of Retinal Pigment Epithelium Phagocytosis
- 88.1 Introduction
- 88.2 Materials and Methods
- 88.2.1 Open Reading Frame Phage Display
- 88.2.2 RPE Phagocytosis Assay
- 88.2.3 MerTK Ligand Studies
- 88.3 Results
- 88.3.1 Unbiased Identification of Tulp1 as a Phagocytosis Ligand
- 88.3.2 Characterization of MerTK as a Tulp1 Receptor
- 88.4 Discussion
- References
- Chapter 89: Isolating Photoreceptor Compartment-Specific Protein Complexes for Subsequent Proteomic Analysis
- 89.1 Introduction
- 89.2 Materials and Methods
- 89.2.1 Animals
- 89.2.2 Time-Controlled Transcardiac Perfusion Crosslinking (tcTPC)
- 89.2.3 Preparation of Retinal Sections
- 89.2.4 Laser Microdissection
- 89.2.5 Retinal Homogenate
- 89.2.6 Western Blotting Analysis
- 89.3 Results
- 89.3.1 Isolation and Capture of Photoreceptor Compartments
- 89.3.2 Tulp1 Complexes in the Retina
- 89.3.3 Tulp1 Compartment-Specific Complexes
- 89.4 Discussion
- References
- Chapter 90: Expression of the Integrin Coreceptor Transglutaminase-2 in the RPE In Vivo and in Culture
- 90.1 Introduction
- 90.2 Materials and Methods
- 90.2.1 Animals and Tissue Collection
- 90.2.2 Immunofluorescence Microscopy
- 90.2.3 Immunoblotting
- 90.3 Results
- 90.3.1 Comparison of TG2 Protein Levels of Wild-Type and ®5 -/- Mouse Eyecups
- 90.3.2 Localization of TG2 in Wild-Type Mouse Retina
- 90.3.3 Localization of TG2 in Wild-Type Rat RPE in Primary Culture
- 90.4 Discussion
- References
- Chapter 91: On Your Marks. Get Bound. Internalize!
- 91.1 Introduction
- 91.2 On Your Marks.
- 91.3 Get Bound.
- 91.4 Internalize
- 91.5 Perspectives
- References
- Chapter 92: Endo-Lysosome Function in the Retinal Pigment Epithelium in Health and Disease
- 92.1 Introduction
- 92.2 Late Endosomes and Lysosomes: Function and Dysfunction
- 92.3 Late Endosomes and Lysosomes in the RPE
- 92.4 RPE Late Endosome-Lysosome Dysfunction, Impaired Cholesterol Trafficking, and Retinal Degenerations
- 92.5 Conclusions
- References
- Chapter 93: a v b 5 Integrin-Dependent Diurnal Phagocytosis of Shed Photoreceptor Outer Segments by RPE Cells Is Independent of the Integrin Coreceptor Transglutaminase-2
- 93.1 Introduction
- 93.2 Materials and Methods
- 93.2.1 Animals and Tissue Collection
- 93.2.2 Histology
- 93.2.3 Quantification of POS Phagosomes in the RPE
- 93.3 Results
- 93.3.1 TG2 -/- Mice Display Normal Retinal Architecture
- 93.3.2 The RPE in TG2 -/- Mice Displays a Normal Diurnal Peak of Rod POS Phagocytosis
- 93.4 Discussion
- References
- Chapter 94: Trafficking of Presynaptic PMCA Signaling Complexes in Mouse Photoreceptors Requires Cav1.4 a 1 Subunits
- 94.1 Introduction
- 94.2 Materials and Methods
- 94.2.1 Animals
- 94.2.2 Immunohistochemistry
- 94.3 Results
- 94.3.1 Nob2 Mutation of Cav1.4 Is Associated with Mislocalization of PMCA1 but not PMCA2
- 94.4 Discussion
- References
- Chapter 95: Roles for AMP-Activated Protein Kinase in RPE Cell Function
- 95.1 Introduction
- 95.2 Mechanistic Regulation of AMPK Activity
- 95.2.1 Allosterical Activation of AMPK
- 95.2.2 Activation of AMPK via Thr 172 Pphosphorylation by AMPK Kinase
- 95.2.3 AMPK Inactivation
- 95.3 AMPK and RPE Cell Barrier Function
- 95.4 AMPK and RPE Cell Phagocytosis
- 95.5 AMPK and RPE Cell Inflammatory Responses
- 95.6 AMPK and RPE Cell Survival
- 95.7 Perspectives
- References
- Chapter 96: Genome-Wide Occupancy Analysis by ChIP-chip and ChIP-Seq
- 96.1 Introduction
- 96.2 ChIP-chip and ChIP-Seq by Illumina and ABI/SOLiD
- 96.3 Insights from Genome-Wide Occupancy Studies
- 96.3.1 Location of Transcription Factor Occupancy
- 96.3.2 Chromatin Signatures
- 96.4 Applications of ChIP-chip and ChIP-Seq to the Study of Photoreceptor
- 96.5 Conclusions and Perspectives
- References
- Chapter 97: The Bisretinoids of RPE Lipofuscin: A Complex Mixture
- 97.1 RPE Lipofuscin Is Unique in Its Origin
- 97.2 A2E, Isomers, and Precursors
- 97.3 The All- Trans -Retinal Dimer Series of Lipofuscin Fluorophores
- 97.4 The Bisretinoid A2-DHP-PE
- 97.5 Photooxidized Forms of Bisretinoid Pigments in RPE Lipofuscin
- 97.6 Discussion
- References
- Chapter 98: Biochemical Characterization of Cone Cyclic Nucleotide-Gated (CNG) Channel Using the Infrared Fluorescence Detection System
- 98.1 Introduction
- 98.2 Materials and Methods
- 98.2.1 Infrared Fluorescence Western Detection of Cone CNG Channel
- 98.2.2 Chemical Cross-Linking
- 98.2.3 Blue Native-PAGE
- 98.3 Results
- 98.3.1 Simultaneous Detection of CNGA3 and CNGB3 in the Mouse Retina by Infrared Fluorescence Western Detection
- 98.3.2 Analysis of Cone CNG Channel Complexes Using Chemical Cross-Linking and Infrared Fluorescence Detection
- 98.3.3 Analysis of Cone CNG Channel by Blue Native-PAGE
- 98.4 Discussion
- References
- Chapter 99: Ras-Associating Domain Proteins: A New Class of Cyclic Nucleotide-Gated Channel Modulators
- 99.1 Introduction
- 99.2 Materials and Methods
- 99.2.1 Cell Culture Studies and Vectors
- 99.2.2 Sequence Alignment and Domain Assessment
- 99.2.3 Statistical Methods
- 99.3 Results
- 99.3.1 Assessment of RA Domains in PHLPP1 and PHLPP2
- 99.3.2 PHLPP1 and 2 Do Not Have Channel Modulatory Properties
- 99.4 Discussion
- References
- Chapter 100: Tulp1 Is Involved in Specific Photoreceptor Protein Transport Pathways
- 100.1 Introduction
- 100.2 Materials and Methods
- 100.2.1 Animals
- 100.2.2 Immunofluorescent Staining of Retinal Sections
- 100.3 Results
- 100.4 Discussion
- References
- Chapter 101: Potential Cellular Functions of N -Ethylmaleimide Sensitive Factor in the Photoreceptor
- 101.1 Introduction
- 101.2 NSF in Photoreceptor Synaptic Regulation
- 101.3 NSF in Photoreceptor Membrane Protein Trafficking
- 101.4 Summary
- References
- Chapter 102: Identification of Pigment Epithelium-Derived Factor Receptor (PEDF-R) Antibody Epitopes
- 102.1 Introduction
- 102.2 Materials and Methods
- 102.2.1 Peptides, Proteins, and Antibodies
- 102.2.2 Slot Blot
- 102.2.3 Membrane Fractionation
- 102.2.4 Polyacrylamide Gel Electrophoresis
- 102.2.5 Immuno-Blot
- 102.3 Results
- 102.3.1 Immunoreactivity to Recombinant PEDF-R Polypeptide Fragments
- 102.3.2 Immunoreactivity to Synthetic PEDF-R Peptides
- 102.3.3 Immunoreactivity to Native Rat PEDF-R
- 102.4 Discussion
- References
- Chapter 103: HCN1 Channels Significantly Shape Retinal Photoresponses
- 103.1 Introduction
- 103.2 Mechanism of HCN1 Channel Activity in Normal Photoreceptor
- 103.3 Altered Single-Flash ERG Responses in HCN1 -/- Mice
- 103.4 Reduction in Scotopic ERG Flicker Fusion Frequency in HCN1 -/- Mice
- 103.5 Summary and Perspective
- References
- Chapter 104: The Role of the P2X7 Receptor in the Retina: Cell Signalling and Dysfunction
- 104.1 Introduction
- 104.1.1 ATP and Purinergic Receptors
- 104.1.2 ATP Storage, Release and Degradation
- 104.1.3 Purine Receptors
- 104.2 The P2X7 Receptor
- 104.2.1 Role of the P2X7 Receptor in Neuronal Modulation in the Retina
- 104.2.2 Role of the P2X7 Receptor in Neuronal Degeneration in the Retina
- 104.2.3 Role of the P2X7 Receptor in Müller Cells
- 104.2.4 Role of the P2X7 Receptor in Retinal Microglial Cells
- 104.3 Conclusion
- References
- Chapter 105: A Tale of Two Kinases in Rods and Cones
- 105.1 Introduction
- 105.2 The Function of GRK7
- 105.3 Regulation of GRK1 and GRK7 Activity Under Changing Light Conditions
- References
- Chapter 106: Protein Tyrosine Phosphatase 1B: A Novel Molecular Target for Retinal Degenerative Diseases
- 106.1 Introduction
- 106.2 Importance of Insulin Receptor Signaling in Retina
- 106.3 Interaction Between PTP1B and IR
- 106.4 Implication of PTP1B Activity in Retinal Diseases
- 106.5 PTP1B as a Therapeutic Target
- 106.6 Conclusions
- References
- Chapter 107: Protein Tyrosine- O -Sulfation in Bovine Ocular Tissues
- 107.1 Introduction
- 107.2 Materials and Methods
- 107.2.1 Isolation of Tissues from Bovine Eyes
- 107.2.2 Western Blot of Tissue Lysates
- 107.3 Results
- 107.4 Discussion
- References
- Erratum
- Index
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