
Programmed Cell Death Part B
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Content
- Cover
- Copyright Page
- TOC$Contents
- Contributors
- Preface
- Volume in Series
- CH$Chapter 1: Analysis of Autophagic and Necrotic Cell Death in Dictyostelium
- 1. Introduction
- 2. Growing Dictyostelium Cells in Monolayer Cultures
- 3. Inducing Autophagic Vacuolar Cell Death
- 4. Further Exploration of Autophagic Cell Death
- 5. Inducing Necrotic Cell Death
- 6. Further Exploration of Necrotic Cell Death
- References
- CH$Chapter 2: Methods and Protocols for Studying Cell Death in Drosophila
- 1. Introduction
- 2. Cell Death Analysis During Development
- 3. Biochemical Analysis
- 4. Genetic Analysis
- References
- CH$Chapter 3: In Vivo and In Vitro Methods for Studying Apoptotic Cell Engulfment in Drosophila
- 1. Introduction
- 2. Culture Conditions
- 3. Labeling of Apoptotic Cells
- 4. Visualizing the Macrophages
- 5. Quantification and Statistics
- 6. Engulfment in Cell Culture
- Acknowledgments
- References
- CH$Chapter 4: A Mouse Mammary Epithelial Cell Model to Identify Molecular Mechanisms Regulating Breast Cancer Progression
- 1. Introduction
- 2. A Novel Mouse Mammary Epithelial Cell Model
- 3. Protocols
- 4. Concluding Remarks
- References
- CH$Chapter 5: Immortalized Mouse Epithelial Cell Models to Study the Role of Apoptosis in Cancer
- 1. Introduction
- 2. Immortalization of Baby Mouse Kidney, Mammary, Prostate, and Ovarian Surface Epithelial Cells
- 3. Development of iBMK Cell Lines for Identifying the Role of Apoptosis in Cancer
- 4. Aposcreen: An iBMK Cell-Based Screen for the Identification of Apoptosis-Inducing Compounds as Potential Anti-Cancer Agents
- 5. Adaptation of the iBMK Cell Model System for the Evaluation of Tissue-Specific Tumor-Promoting Functions
- 6. Tumorigenicity Assay
- 7. Noninvasive In Vivo Monitoring of Tumor Growth by Expression of Fluorescence and Chemiluminescence Markers
- 8. Tumor-Derived Cell Lines (TDCLs) as a Model System for Epithelial Tumor-Promoting Functions
- 9. Concluding Remarks and Future Perspectives
- Acknowledgments
- References
- CH$Chapter 6: DNA Damage Response and Apoptosis
- 1. Introduction
- 2. Methods
- Notes
- Acknowledgments
- References
- CH$Chapter 7: Phorbol Ester-Induced Apoptosis and Senescence in Cancer Cell Models
- 1. Introduction
- 2. PKCdelta as a Pro-Apoptotic Kinase
- 3. PKCdelta as a Mediator of Apoptotic Responses in Prostate Cancer Cells: The Emergence of an Autocrine Paradigm
- 4. Roles of PKCalpha and PKCepsilon LNCAP Cell Death and Survival
- 5. Regulation of Cell Cycle and Senescence by PKC
- 6. Determination of Phorbol Ester-Induced Apoptosis in Prostate Cancer Cells
- 7. Adenoviral Expression of PKC Isozymes
- 8. RNA Interference of PKC Isozymes
- 9. Collection and Storage of CM from LNCaP Cells
- 10. Determination of Senescence in Response to Phorbol Esters
- References
- CH$Chapter 8: Manipulation of PKC Isozymes by RNA Interference and Inducible Expression of PKC Constructs
- 1. Introduction
- 2. Methods
- Acknowledgments
- References
- CH$Chapter 9: Studying p53-Dependent Cell Death In Vitro and In Vivo
- 1. Introduction
- 2. Studying p53-Dependent Cell Death In Vitro
- 3. Overexpression of p53 by Adenovirus (Ad)
- 4. Silencing the p53 Gene by Retroviral Vector
- 5. Studying the Apoptotic Response
- 6. Studying p53-Dependent Apoptosis In Vivo
- References
- CH$Chapter 10: NF-kappaB as a Determinant of Distinct Cell Death Pathways
- 1. Introduction
- 2. Methods
- 3. DNA
- 4. Proteins
- 5. Metabolic Health
- 6. Senescence Detection
- References
- CH$Chapter 11: Purification and Bioassay of Hedgehog Ligands for the Study of Cell Death and Survival
- 1. Introduction
- 2. Hedgehog and the Regulation of Cell Death
- 3. Generation of Recombinant Hedgehog Ligands
- References
- CH$Chapter 12: Experimental Approaches to Investigate the Proteasomal Degradation Pathways Involved in Regulation of Apoptosis
- 1. Introduction
- 2. General Instructions
- 3. Protocols
- References
- CH$Chapter 13: Ubiquitination Mediated by Inhibitor of Apoptosis Proteins
- 1. Introduction
- 2. In Vitro Ubiquitination Assay
- 3. In Vivo Ubiquitination Assay
- Acknowledgments
- References
- CH$Chapter 14: Phosphatases and Regulation of Cell Death
- 1. Introduction
- 2. Identification of the Putative Phosphatase in Cells
- 3. In Vitro Phosphatase Assays
- 4. Interaction of the Phosphatase and Apoptotic Protein
- 5. Linking Phosphatase Activity to Cell Death Protein Function
- 6. Conclusion
- Acknowledgments
- References
- CH$Chapter 15: Analysis of Neuronal Cell Death in Mammals
- 1. Introduction
- 2. Apoptosis Detection In Vitro
- 3. Assessment of Cell Death
- 4. Apoptosis Detection in Brain Development
- 5. Detection of Synaptic Apoptosis (Synaptosis)
- 6. Conclusions
- Acknowledgments
- References
- CH$Chapter 16: Dissecting Apoptosis and Intrinsic Death Pathways in the Heart
- 1. Introduction
- 2. Protocols
- Acknowledgments
- References
- CH$Chapter 17: Quantification of Vascular Endothelial Cell Apoptosis In Vivo
- 1. Introduction
- 2. Protocols
- References
- CH$Chapter 18: Recombinant TRAIL and TRAIL Receptor Analysis
- 1. Introduction
- 2. Generation of Recombinant TRAIL
- 3. Analysis of TRAIL Receptors
- 4. Concluding Remarks
- Acknowledgments
- References
- CH$Chapter 19: Analysis of Tnf-Related Apoptosis-Inducing Ligand In Vivo Through Bone Marrow Transduction and Transplantation
- 1. Introduction
- 2. Generation of Retroviral Infection Medium
- 3. Bone Marrow Cell Preparation
- 4. Retroviral Transduction of Bone Marrow Cells
- 5. Bone Marrow Transplantation
- 6. Assessment of Bone Marrow Transplantation
- 7. Pathologic Evaluation of TRAIL-Transduced Mice
- 8. Methods for Immunohistochemical Staining for TRAIL Expression
- 9. Applications that Use the Bone Marrow Transplantation Approach
- Acknowledgments
- References
- CH$Chapter 20: Overcoming Resistance to Trail-Induced Apoptosis in Prostate Cancer by Regulation of c-FLIP
- 1. Introduction
- 2. Structure and Molecular Mechanisms of c-FLIP in Apoptosis
- 3. Expression of c-FLIP
- 4. Regulation of c-FLIP Expression
- 5. Targeting c-FLIP to Enhance Apoptosis in Cancer Cells
- 6. Methods and Materials
- Acknowledgments
- References
- CH$Chapter 21: Caspase Assays: Identifying Caspase Activity and Substrates In Vitro and In Vivo
- 1. Introduction
- 2. Caspase Methods
- 3. Conclusion
- References
- CH$Chapter 22: Synthesis and Biophysical Characterization of Stabilized alpha-Helices of BCL-2 Domains
- 1. Introduction
- 2. Synthesis of Non-Natural Amino Acids for Peptide Stapling
- 3. Design and Synthesis of Stabilized alpha-Helices of BCL-2 Domains (SAHBs)
- 4. Structural Assessment of SAHBs by Circular Dichroism (CD)
- 5. Protease Resistance Testing of SAHBs
- 6. Cell Permeability Screening of SAHBs
- 7. Summary
- Acknowledgments
- References
- CH$Chapter 23: Dissection of the BCL-2 Family Signaling Network with Stabilized alpha-Helices of BCL-2 Domains
- 1. Introduction
- 2. BCL-2 Family Binding Measurements by Fluorescence Polarization Assay
- 3. In Vitro Release Assays as a Measure of Pro-Apoptotic Activity
- 4. Measurement of Cellular Apoptosis Induction
- 5. Identification of In Situ Mechanistic Targets of SAHBs
- 6. Summary
- Acknowledgments
- References
- CH$Chapter 24: ERM-Mediated Genetic Screens in Mammalian Cells
- 1. Introduction
- 2. Methods and Design
- 3. ERM-Mediated Genetic Screens and Re-PCA
- 4. Conclusions
- Acknowledgments
- References
- Author Index
- IDX$Subject Index
- Color Plate Section
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