Bioinformatics Research and Development

BIRD Conference.- A Tree Index to Support Clustering Based Exploratory Data Analysis.- XMAS: An Experiential Approach for Visualization, Analysis, and Exploration of Time Series Microarray Data.- Clustering in a Fixed Manifold to Detect Groups of Genes with Similar Expression Patterns.- Families of FPGA-Based Accelerators for BLAST Algorithm with Multi-seeds Detection and Parallel Extension.- Fast Structured Motif Search in DNA Sequences.- A Discriminative Method for Protein Remote Homology Detection Based on N-nary Profiles.- Searching for Supermaximal Repeats in Large DNA Sequences.- Motif Location Prediction by Divide and Conquer.- Translational Control by RNA-RNA Interaction: Improved Computation of RNA-RNA Binding Thermodynamics.- A Symmetry-Free Subspace for Ab initio Protein Folding Simulations.- Comparative Analysis of Disulfide Bond Determination Using Computational-Predictive Methods and Mass Spectrometry-Based Algorithmic Approach.- Exploration of Evolutionary Relations between Protein Structures.- Two Local Search Methods for Protein Folding Simulation in the HP and the MJ Lattice Models.- A Robust Class of Stable Proteins in the 2D HPC Model.- A Novel Adaptive Multiple Imputation Algorithm.- Topological Metrics in Blast Data Mining: Plasmid and Nitrogen-Fixing Proteins Case Studies.- Gene Expression Mining for Cohesive Pattern Discovery.- Identifying Subcellular Locations from Images of Unknown Resolution.- E-BioFlow: Different Perspectives on Scientific Workflows.- Knowledge Acquisition Focused Cooperative Development of Bio-ontologies - A Case Study with BIO2Me.- Nested q-Partial Graphs for Genetic Network Inference from "Small n, Large p" Microarray Data.- A Computational Method for Reconstructing Gapless Metabolic Networks.- Finding FrequentSubgraphs in Biological Networks Via Maximal Item Sets.- Multi-functional Protein Clustering in PPI Networks.- Protein-Protein Interaction Network Querying by a "Focus and Zoom" Approach.- Matching Spatial Regions with Combinations of Interacting Gene Expression Patterns.- Combining Molecular and Physiological Data of Complex Disorders.- Combining Protein-Protein Interaction (PPI) Network and Sequence Attributes for Predicting Hypertension Related Proteins.- Genome Structure and Characterisation of an Endogenous Retrovirus from the Zebrafish Genome Project Database.- Bayesian Phylogeny on Grid.- Comparison of Exact String Matching Algorithms for Biological Sequences.- A New Approximation Algorithm for the Minimum Fragment Removal Problem.- Indexing Factors in DNA/RNA Sequences.- Implementation of a Swap Matching Algorithm Using a Graph Theoretic Model.- Suffix Tree Characterization of Maximal Motifs in Biological Sequences.- Efficient Seeding Techniques for Protein Similarity Search.- An Algorithm for Multiple and Global Alignments.- LASA: A Tool for Non-heuristic Alignment of Multiple Sequences.- SVM-Based Local Search for Gene Selection and Classification of Microarray Data.- GENFOCS - A Comparative Tool on Gene Finding with Sensitivity and Specificity.- Gene Machine© - A Hardware/Software Platform for Analyzing Genome Data.- Complex Representation of DNA Sequences.- Wavelet Analysis of Impulses in Axon Physiology.- Acquisition and Algorithms for Fluorescence Applications.- Control of the Lasers Dynamics by Pumping Modulation for Biophotonics Applications.- Quantum Well Lasers for Medical Industry.- Computational Model for the Study of the Fractal Parameters Characteristic for the Surface of Titanium Dental Implants.- VEMS-TM - A ManagementInfrastructure.- PTF Model for Evaluating the Relationships between the VAC and Antimicrobial Resistance in Human Communities.