
Identification of the 'Active' Fraction and Metabolic Pathways in Trace Organic Contaminants Removal Using Stable Isotope Probing
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Content
- Cover
- Copyright
- Acknowledgments
- Abstract and Benefits
- Table of Contents
- List of Tables
- List of Figures
- List of Acronyms
- Executive Summary
- Chapter 1.0: Introduction
- 1.1 Background
- 1.2 Biodegradation of Trace Organic Compounds in Activated Sludge
- 1.3 Bisphenol-A as Trace Organic Compound of Interest
- 1.4 Tools to Elucidate the 'Active' Fraction and Metabolic Pathways of TOrC Biodegradation in Activated Sludge
- 1.5 Organization of Report
- Chapter 2.0: DNA-SIP Protocol Optimization
- 2.1 Stable Isotope Probing Overview
- 2.2 Establishment of Optimal Experimental Conditions for DNA-SIP Batch Experiments
- 2.3 Optimization of Separation by Density Gradient Ultracentrifugation
- 2.4 Evaluation of DNA Visualization Techniques
- Chapter 3.0: Techniques and Methods for BPA Degradation Studies and DNA-SIP Batch Experiments
- 3.1 Mixed Culture Nitrifying Community
- 3.1.1 Nitrifying Sequencing Batch Reactor
- 3.1.2 Evaluation of BPA Biodegradation by Mixed Culture Nitrifying Community
- 3.2 Source of Biomass for DNA-SIP Experiments
- 3.3 Exposure of Biomass to BPA
- 3.3.1 Preliminary Evaluation of BPA Biodegradation
- 3.3.2 BPA Exposure Conditions
- 3.3.3 Examination of Microbial Community Structure Changes Due to BPA Exposure Using Next Generation Sequencing
- 3.3.4 RNA-seq of Microbial Community Exposed to BPA
- 3.4 DNA-SIP Experiments
- 3.4.1 DNA Extraction and Density Gradient Ultracentrifugation
- 3.4.2 Quantification of Gradient Fractions
- 3.4.3 Characterization of Gradient Fractions Using Next Generation Sequencing
- 3.5 Analytical Methods
- Chapter 4.0: Evaluation of BPA Biodegradation by a Mixed Culture Nitrifying Community
- 4.1 Nitrifying Sequencing Batch Reactor
- 4.2 BPA Biodegradation
- 4.2.1 BPA Biodegradation Experiments: 35 µg/L BPA Spike
- 4.2.2 BPA Biodegradation Experiments: 900 µg/L BPA Spike
- 4.3 Insights Applied to DNA-SIP Experiment Development
- Chapter 5.0: BPA Transformation by Microbial Communities from a Full-Scale WWTP
- 5.1 Evaluation of BPA Biodegradation
- 5.2 BPA Degradation during BPA Exposure
- 5.3 Microbial Community Structure Before and After Exposure to BPA
- 5.4 Metatranscriptomic Analysis of Microbial Community Exposed to BPA
- Chapter 6.0: DNA-SIP Using 13C BPA for Microbial Communities from a Full-Scale WWTP
- 6.1 BPA Biodegradation in SIP Experiments
- 6.2 Analysis of SIP Gradient Fractions
- 6.3 Identification of BPA Assimilating Microbes
- Chapter 7.0: Conclusions
- Appendix A: BPA Biodegradation Metabolite: Time Course Data from DNA-SIP Experiments
- References
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