Biophysical Approaches for the Study of Membrane Structure Part B

PrefaceTobias Baumgart and Markus Deserno1. Characterization of domain formation in complex membranes: Analyzing the bending modulus from simulations of complex membranesRainer A. Böckmann and Marius F.W. Trollmann2. The density-threshold affinity: Calculating lipid binding affinities from unbiased Coarse-Grain Molecular Dynamics simulationsGrace Brannigan, Jahmal Ennis, Ezry Santiago-McRae and Jesse W Sandberg3. Uncertainty quantification for trans-membrane stresses and moments from simulationMarkus Deserno and Samuel Lincoln Foley4. Binary Bilayer Simulations for Partitioning Within MembranesWonpil Im, Richard Walter Pastor and Soohyung Park5. Modeling Asymmetric Cell Membranes at All-atom ResolutionJeffrey Klauda, Jessica Bodosa and Anthony Pane6. Multiscale remodeling of biomembranes and vesiclesReinhard Lipowsky7. Building complex membranes with Martini 3Siewert-Jan Marrink, Helgi Ingolfur Ingolfsson, Tugba N. Ozturk, Melanie König, Timothy S. Carpenter, Kasper Busk Pedersen and Tsjerk A. Wassenaar8. Predicting lipid sorting in curved bilayer membranesLuca Monticelli, Cecile Hilpert and Jackson Crowley9. Simulating asymmetric membranes using P21 periodic boundary conditionsRichard Walter Pastor, Amy Rice, Bernard Brooks and Samarjeet Prasad10. Free Energy Calculations for Membrane Morphological Transformations and Insights to Physical Biology and OncologyRavi Radhakrishnan, Tobias Baumgart, Kshitiz Parihar, Seung-Hyun Brianna Ko, Wei Guo, Paul Janmey, Ryan Bradley, Phillip Taylor and Natesan Ramakrishnan11. Modeling the mechanochemical feedback for membrane-protein interactions using a continuum mesh modelPadmini Rangamani and Christopher Lee12. Lattice-based mesoscale simulations and mean-field theory of cell membrane adhesionBartosz Rózycki, Jingeli Hu, Long Li, Lukasz Milewski and Jie Gao13. Dynamic framework for large-scale modelling of membranes and peripheral proteinsMohsen Sadeghi and David Rosenberger14. Computing the spontaneous curvature of dynamic lipid complexes in molecular dynamics simulationsAlexander Sodt, Amirali Hossein and Kayla Sapp15. Non-affine deformation analysis and 3D packing defects: A new way to probe membrane heterogeneity in molecular simulationsAnand Srivastava and Madhusmita Tripathy16. Analyzing curvature and lipid distributions in molecular dynamics simulations of complex membranesPeter Tieleman