
From Single Molecules to Nanoscopically Structured Materials
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Content
- Intro
- Preface
- Contents
- Mechanical Properties of Single Molecules and Polymer Aggregates
- 1 Phase Behavior, Structure, and Elastic Properties of Single Chains
- 1.1 Phase Behavior of Coarse-Grained Single-Chain Models
- 1.2 Force Versus Extension Behavior in the Good Solvent Regime
- 1.3 Single Chain Collapse Versus Adsorption
- 1.4 Adsorption of Single Chains
- 1.4.1 Copolymer Localization on Selective Liquid-Liquid Interfaces
- 1.4.2 Single Chain Adsorption: Statics and Kinetics
- 1.5 Manipulation of Single Chains: Force-Induced Detachment and Translocation Through Pores
- 1.5.1 Detachment of Adsorbed Polymer Chain: Statics and Dynamics
- 1.5.2 Polymer Translocation Through Narrow Pores in the Membranes and Escape from Long Pores
- 2 Reversible Kinetics of Hydrogen-Bond Networks
- 2.1 Force Probe MD Simulations of Calix[4]arene Catenanes
- 2.2 Stochastic Modeling of Reversible Bond Breakage
- 3 Force Spectroscopy and Microscopy of Modular Macromolecules
- 3.1 Preferential Exclusion of Ectoin Enhances the Mechanical Stability of Fibronectin
- 3.1.1 Stretching of Native Fibronectin
- Influence of Ectoine on the Unfolding Force of FN-III
- 3.2 Mechanically Interlocked Calix[4]arene Dimers Under External Force
- 3.2.1 Force Spectroscopy of Single bis-Loop Tetra-Urea Calix[4]arene Catenanes
- Force-Extension Curves of Calixarene Catenane Oligomers
- Reversibility of Pulling Experiments
- Analysis of the Force-Distance Curves
- Impact of the Solvent on Rupture Forces
- Effect of the Linker and Contour Length on Capsule Breakage
- Comparison with Theory
- 4 Mechanical Properties of Nucleic Acids with Binding Pockets for Small Molecules
- References
- Optical Properties of Assemblies of Molecules and Nanoparticles
- 1 Introduction
- 2 Preparation and Photophysical Properties
- 2.1 Multichromophoric Systems Tailored for Energy Transfer Applications
- 2.1.1 Linear and Kinked Donor-Acceptor Dyads
- PDI-TDI Dyads
- Synthesis of the Linker
- Synthesis of the PDI Unit 6a (Donor)
- Synthesis of the TDI unit 13 (Acceptor)
- Synthesis of the Linear Dyad 1
- Synthesis of the Kinked Dyad 2
- PMI-TDI Dyad
- PDI-TDI-PDI Triad
- 2.1.2 Dendrimer-Based and Star-Shaped Multichromophores
- 2.2 Complexes from Colloidal Semiconductor Quantum Dots and Organic Dye Molecules
- 2.2.1 Semiconductor Quantum Dots
- 2.2.2 Functionalized Organic Dye Molecules
- 2.2.3 Quantum Dot/Dye Complexes
- 2.2.4 Quantum Dot Oligomers
- 2.3 Biological-Chemical Hybrids Built from Light-Harvesting Complexes
- 2.3.1 Hybrid Constructs of Light-Harvesting Complex II (LHCII) and Quantum Dots
- 2.3.2 Hybrid Constructs of LHCII and Rylene Dyes
- 2.4 Dye Molecules in Cholesteric Phases: Towards Lasing Applications.
- 2.4.1 Liquid Crystal Lasers
- 2.4.2 Crosslinked Polymeric Cholesterics as Lasing Material
- 3 Single-Molecule Studies of Electronic Excitation Energy Transfer
- 3.1 Flexibility of Donor-Acceptor Dyads
- 3.2 Control of the Energy Transfer Pathway by Dual Pulse Excitation
- 3.3 Read-Out of the Spin State of a Single Molecule by the Emission from Proximate Fluorophores
- 3.4 Rates and Mechanism of Energy Transfer
- 4 Theoretical Description of Vibronic Spectra and Electronic Coupling
- 4.1 Vibronic Spectra of PMI and PDI Chromophores
- 4.2 Electronic Coupling in Donor-Acceptor Dyads
- References
- Structure Formation of Polymeric Building Blocks: Complex Polymer Architectures
- 1 Introduction
- 2 Polyphenylene Dendrimers
- 2.1 Introduction
- 2.2 Synthesis of PPDs
- 2.3 Dissociation of Charged PPDs and Ion Transport
- 2.4 PPDs as Light-Harvesting, Light-Emitting, and Photoswitchable Multichromophores
- 2.5 PPDs as Hosts and Drug Carriers
- 2.6 PPDs as Building Blocks for Self-Assembly
- 2.7 Conclusions
- 3 Cylindrical Brush Polymers
- 3.1 Introduction
- 3.2 Simulations of Single Brushes
- 3.3 Experiments on Individual Brushes
- 3.3.1 Polymethacrylate-Polystyrene Brushes in Toluene and Cyclohexane
- 3.3.2 Polymer Brushes with Poly-l-lysine Side Chains
- 3.4 Intramolecular Phase Separation Within Cylindrical Copolymer Brushes with Incompatible Side Chains
- 3.5 Simulations of Cylindrical Bottlebrush Polymers
- 3.6 Complex Formation of Polymer Brushes
- 3.7 Complexes Formed in Between Polyelectrolytes in Aqueous Solution
- 3.8 Complex Formation Between Weakly Charged Polyelectrolytes in Organic Solvents
- 3.9 Adsorption to Surfaces
- 3.10 Conclusions
- 4 Supramolecular Structure Formation by Directed Interactions
- 4.1 Introduction
- 4.2 Solid-state NMR Techniques for Analyzing Structure and Dynamics
- 4.3 Self-Assembly and Dynamics of Polypeptides
- 4.4 Polymers with Different Building Blocks
- 4.5 Interplay of Undirected and Directed Interactions
- 4.6 Columnar Structures from Discotic Liquid Crystals
- 4.7 Conclusions
- 5 Block Copolymers and Confinement
- 5.1 Diblock Copolymers Confined in Miniemulsion Droplets
- 5.2 Junction-Point Reactive Block Copolymers for Surface Modification
- 5.3 Nanoparticles Confined in a Polymersome Shell Layer
- 5.4 Conclusion
- 6 Towards Synthesis on an Insulating Surface
- 6.1 Introduction
- 6.2 Proof of Concept: Dehalogenation and Covalent Coupling on an Insulating Surface
- 6.3 Towards Hierarchical Structure Formation: Exploring Two-Step Reactions
- References
- Polymer Complexes in Biological Applications
- 1 Exploring Cell Interactions of Dendritic and Protein Polyelectrolytes
- 1.1 Introduction
- 1.2 Polycationic and Polyanionic Core-Shell Polyphenylene Dendrimers
- 1.3 Polycationic Serum Albumin Proteins for Gene Delivery
- 1.4 Albumin Copolymer Polyelectrolytes Allow Efficient Drug Delivery
- 1.5 Conclusions
- 2 Gene Transfection Utilizing Cationic Cylindrical Brush Polymers
- 2.1 Introduction
- 2.2 Polymers for Transfection
- 2.3 Brush Polymer Synthesis and DNA Complexation
- 2.4 Transfection with Brush Polymers
- 2.5 Conclusions
- References
- Computational Studies of Biomembrane Systems: Theoretical Considerations, Simulation Models, and Applications
- 1 Introduction
- 2 Theory and Simulation of Lipid Bilayers
- 2.1 Basic Continuum Theory Concepts
- 2.1.1 Continuum Elasticity of Lipid Membranes
- 2.1.2 The Helfrich Hamiltonian
- 2.1.3 Refining the Helfrich Model
- 2.2 Coarse-Grained Lipid Models
- 2.2.1 Cooke Model
- 2.2.2 Lenz Model
- 2.2.3 MARTINI Model
- 2.3 Obtaining Material Parameters
- 2.3.1 Bending Modulus
- 2.3.2 Gaussian Modulus
- 2.4 The Tension of Lipid Membranes
- 2.5 Membrane Heterogeneity and Lipid Rafts
- 3 Membrane-Protein Interactions
- 3.1 Hydrophobic Mismatch
- 3.2 Curvature-Mediated Interactions Between Proteins
- 3.2.1 The Mystery of the Sign
- 3.2.2 The Nonlinear Ground State: Take I
- 3.2.3 Linearization and Superposition Approximation
- 3.2.4 Linearization and a Full Two-Center Solution
- 3.2.5 Linearization Using Effective Field Theory
- 3.2.6 Fluctuation-Mediated Interactions
- 3.2.7 The Nonlinear Ground State: Take II
- 3.2.8 Curvature-Mediated Interactions in Simulations
- 4 Multiscale Modeling of Lipid and Membrane Protein Systems
- 4.1 Multiscale Modeling: Approaches and Challenges
- 4.2 The Light-Harvesting Complex
- 5 Conclusions
- References
- Index
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