
Bioinformatics with Python Cookbook
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Tiago Antao is a bioinformatician currently working in the field of genomics. A former computer scientist, Tiago moved into computational biology with an MSc in Bioinformatics from the Faculty of Sciences at the University of Porto (Portugal) and a PhD on the spread of drug-resistant malaria from the Liverpool School of Tropical Medicine (UK). Postdoctoral, Tiago has worked with human datasets at the University of Cambridge (UK) and with mosquito whole genome sequencing data at the University of Oxford (UK), before helping to set up the bioinformatics infrastructure at the University of Montana. He currently works as a data engineer in the biotechnology field in Boston, MA. He is one of the co-authors of Biopython, a major bioinformatics package written in Python.
Content
Python and the Surrounding Software Ecology
Using Data Processing Libraries: numpy, pandas, arrow, and zarr
Next Generation Sequencing
Advanced NGS Data Processing
Working with Genomes
Population Genetics
Phylogenetics
Using the Protein Data Bank
Bioinformatics Pipelines
Machine Learning for Bioinformatics
Parallel Processing with Dask
Functional and Asynchronous Programming
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The file format ePUB works well for novels and non-fiction books – i.e., 'flowing' text without complex layout. On an e-reader or smartphone, line and page breaks automatically adjust to fit the small displays.
This eBook does not use copy protection or Digital Rights Management
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