RNA Structure Prediction: From Sequence to Secondary Structure to 3D Models
From Sequence to Secondary Structure to 3D Modeling
1st Edition
Will be published approx. 2030
Book
Hardback
500 pages
978-3-527-34774-2 (ISBN)
Description
The systematic guide to current structure prediction software for RNA, including ca. 50 different tools and packages for secondary and tertiary structure prediction.
More details
Language
English
Place of publication
Weinheim
Germany
Target group
Professional and scholarly
Illustrations
200 farbige Abbildungen
Dimensions
Height: 244 mm
Width: 170 mm
ISBN-13
978-3-527-34774-2 (9783527347742)
Copyright in bibliographic data is held by Nielsen Book Services Limited or its licensors: all rights reserved.
Schweitzer Classification
Person
Gerhard Steger studied chemistry at Darmstadt University and pursued his academic career at Duesseldorf University where he is currently Professor for Biophysics at the Institute for Physical Biology. His primary research interest lies in the folding, structure and function of RNA. He is also the author of a number of several computational tools for the prediction of RNA structure and function.
Content
INTRODUCTION
Biophysics of RNA structure formation
Isostericity of base pairs
Thermodynamic parameters
Programs for drawing RNA structures
SECONDARY STRUCTURE PREDICTION FOR A SINGLE SEQUENCE
Mfold and Unafold
RNAStructure package: fold, partition, MaxExpect, efn2
Vienna RNA package: RNAfold, RNAeval
RNAshapes
RNAfold, Rsample
RNA Framework
SECONDARY STRUCTURE PREDICTION OF TWO INTERACTING RNAS
RNAstructure package: Dynalign, Multilign, PARTS, TurboFold
RNAalifold, ConStruct
RNAcast
LocARNA
R-scale
TERTIARY STRUCTURE PREDICTION (PSEUDOKNOTS)
ProbKnot, ShapeKnots, pknotsRG, pknotsER
DotKnot
HKnot
Knotty
3D MODELING OF RNA
WebFR3D, JAR3D
RNA Bricks, ModeRNA, SimRNA, QRNAS
ROSIE/RNA de novo/FARFAR
RNAComposer, FRABASE 2.0
MC-Pipeline
Vfold
Biophysics of RNA structure formation
Isostericity of base pairs
Thermodynamic parameters
Programs for drawing RNA structures
SECONDARY STRUCTURE PREDICTION FOR A SINGLE SEQUENCE
Mfold and Unafold
RNAStructure package: fold, partition, MaxExpect, efn2
Vienna RNA package: RNAfold, RNAeval
RNAshapes
RNAfold, Rsample
RNA Framework
SECONDARY STRUCTURE PREDICTION OF TWO INTERACTING RNAS
RNAstructure package: Dynalign, Multilign, PARTS, TurboFold
RNAalifold, ConStruct
RNAcast
LocARNA
R-scale
TERTIARY STRUCTURE PREDICTION (PSEUDOKNOTS)
ProbKnot, ShapeKnots, pknotsRG, pknotsER
DotKnot
HKnot
Knotty
3D MODELING OF RNA
WebFR3D, JAR3D
RNA Bricks, ModeRNA, SimRNA, QRNAS
ROSIE/RNA de novo/FARFAR
RNAComposer, FRABASE 2.0
MC-Pipeline
Vfold