Molecular Databases for Protein Sequences and Structure Studies
An Introduction
Published on 22. December 2011
Book
Paperback/Softback
XVI, 236 pages
978-3-642-76811-8 (ISBN)
Description
The amount of molecular information is too vast to be acquired without the use of computer-bases systems. The authors introduce students entering research in molecular biology and related fields into the efficient use of the numerous databases available. They show the broad scientific context of these databases and their latest developments. They also put the biological, chemical and computational aspects of structural information on biomolecules into perspective. The book is required reading for researchers and students who plan to use modern computer environment in their research.
More details
Edition
Softcover reprint of the original 1st ed. 1991
Language
English
Place of publication
Berlin
Germany
Publishing group
Springer Berlin
Target group
Professional and scholarly
Research
Illustrations
XVI, 236 p.
Dimensions
Height: 235 mm
Width: 155 mm
Thickness: 15 mm
Weight
400 gr
ISBN-13
978-3-642-76811-8 (9783642768118)
DOI
10.1007/978-3-642-76809-5
Schweitzer Classification
Other editions
Additional editions
John A.A. Sillince | Maria Sillince
Molecular Databases for Protein Sequences and Structure Studies
An Introduction
Book
12/1991
Springer
€85.55
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Content
One: Introduction.- 1.1 Aims of book.- 1.2 The structure and role of proteins and nucleic acids.- 1.3 The nature of molecular data and its representation.- 1.4 The importance of protein structure and function studies.- 1.5 References.- Two: Computer-Based Research Tools for Molecular Science.- 2.1 The use of computers and online facilities in sequencing.- 2.2 The importance of sequence databanks in sequence analysis.- 2.3 Integration of databank searching with sequence determination.- 2.4 References.- Three: Online Databases in Biochemistry and Molecular Science.- 3.1 The importance of online databases.- 3.2 Why use online services?.- 3.3 What problems motivate using online services?.- 3.4 Types of online databases and CD-ROMs.- 3.5 The financing of databases.- 3.6 Training end-users.- 3.7 Current awareness and in-house systems.- 3.8 References.- Four: Methods of Computer Representation and Registration.- 4.1 Ambiguous versus unambiguous representation.- 4.2 Graphical data representation.- 4.3 Interconversion of structure representation.- 4.4 Registration.- 4.5 References.- Five: Database Searching in Biochemistry and Molecular Science.- 5.1 Bibliographic searching.- 5.2 Patent searching.- 5.3 Substructure searching.- 5.4 References.- Six: Using Expert Systems for Database Searching in Molecular Science.- 6.1 Introduction.- 6.2 Elements of database systems (DBS).- 6.3 Elements of knowledge base systems (KBS).- 6.4 Elements of a knowledge-based management system (KBMS).- 6.5 References.- Seven: The Main Sequence Databanks in Molecular Science.- 7.1 Definitions.- 7.2 Short history of sequence databanks.- 7.3 What databases are available?.- 7.4 The main sequence databases.- 7.5 Data structure and management.- 7.5 Data retrieval and manipulation.- 7.7 An exampleof protein sequnce analysis software.- 7.8 References.- Eight: The Main Structure Databanks in Molecular Science.- 8.1 The significance and history of structure databanks.- 8.2 The Protein Data Bank (PDB) at Brookhaven.- 8.3 The Cambridge Crystallographic Databank.- 8.4 The Complex Carbohydrate Structure Database (CCSD).- 8.5 Integrated access to structure and sequence data.- 8.6 References.- Nine: Sequence Searching.- 9.1 Introduction.- 9.2 First example of a sequence search.- 9.3 Second example of a sequence search.- 9.4 Protein structure prediction.- 9.5 References.- Ten: Case Study: Specification of an Expert System for Protein Structure Prediction.- 10.1 Introduction.- 10.2 Problem dexcription.- 10.3 The main functions of a structure prediction expert system.- 10.4 Elicitation of knowledge from protein scientists.- 10.5 References.- 11: Appendix.- 11.1 Source of information.- 11.2 Addresses.- 11.3 References.