Protein Interactions: Computational Methods, Analysis And Applications

Protein-Protein Interactions: Structural and Dynamical Aspects of Evolutionarily Conserved Protein-Protein Complexes (Himani Tandon, Sneha Vishwanath and Narayanaswamy Srinivasan); A Comprehensive Overview of Sequence-Based Protein-Binding Residue Predictions for Structured and Disordered Regions (Amita Barik and Lukasz Kurgan); Prediction of Protein-Protein Complex Structures by Docking (Danial Pourjafar-Dehkordi and Martin Zacharias); Binding Affinity of Protein-Protein Complexes: Experimental Techniques, Databases and Computational Methods (M Michael Gromiha); Mutational Effects on Protein-Protein Interactions (Jackson Weako, Attila Gursoy and Ozlem Keskin); Predicting the Consequences of Mutations (Hemant Kumar and Julia M Shifman); Protein-Nucleic Acid Interactions: Computational Approaches for Understanding the Recognition Mechanism of Protein-Nucleic Acid Complexes (Ambuj Srivastava, Dhanusha Yesudhas, A Kulandaisamy, Nisha Muralidharan, C Ramakrishnan, R Nagarajan and M Michael Gromiha); Prediction of Nucleic Acid Binding Proteins and Their Binding Sites (Dhanusha Yesudhas, Ambuj Srivastava, Nisha Muralidharan, A Kulandaisamy, R Nagarajan and M Michael Gromiha); Predicting Protein-Binding Sites in Nucleic Acids (Kyungsook Han); Docking Algorithms and Scoring Functions (Arina Afanasyeva, Chioko Nagao and Kenji Mizuguchi); Recent Progress of Methodology Development for Protein-RNA Docking (Yun Guo, Xiaoyong Pan and Hong-Bin Shen); Protein-Ligand Interactions: Protein-Carbohydrate Complexes: Binding Site Analysis, Prediction, Binding Affinity and Molecular Dynamics Simulations (K Veluraja, N R Siva Shanmugam, J Jino Blessy, R A Jeyaram, B Lalithamaheswari and M Michael Gromiha); Quantitative Structure-Activity Relationship in Ligand-Based Drug Design: Concepts and Applications (Vishnupriya Kanakaveti, P Anoosha, R Sakthivel, S K Rayala and M Michael Gromiha); Protein-Ligand Interactions in Molecular Modeling and Structure-Based Drug Design (Devadasan Velmurugan, Dasararaju Gayathri, Chandrasekaran Ramakrishnan and Atanu Bhattacharjee); An Overview of Protein-Ligand Docking and Scoring Algorithms (Ruchika Bhat, Abhilash Jayaraj, Anjali Soni and B Jayaram);