Computational Methods in Systems Biology

Differential and Integral Views of Gene-Phenotype Relations.- Resolving the Three-Dimensional Histology of the Heart.- Bimodal Protein Distributions in Heterogeneous Oscillating Systems.- Expressive Statistical Model Checking of Genetic Networks with Delayed Stochastic Dynamics.- Detection of Multi-clustered Genes and Community Structure for the Plant Pathogenic Fungus.- Analysis of Modular Organization of Interaction Networks Based on Asymptotic Dynamics.- Concretizing the Process Hitting into Biological Regulatory Networks.- Investigating Co-infection Dynamics through Evolution of Bio-PEPA Model Parameters: A Combined Process Algebra and Evolutionary Computing Approach.- Population Dynamics P Systems on CUDA.- Efficient Handling of Large Signaling-Regulatory Networks by Focusing on Their Core Control.- Simulating Insulin Infusion Pump Risks by In-Silico Modeling of the Insulin-Glucose Regulatory System.- Revisiting the Training of Logic Models of Protein Signaling Networks with a Formal Approach Based on Answer Set Programming.