Modifications and Targeting of Protein Termini Part A: Volume 684
Thomas Arnesen(Editor)
Academic Press
Published on 24. May 2023
Book
Hardback
338 pages
978-0-443-15772-1 (ISBN)
Description
Modifications and Targeting of Protein Termini, Volume 684 in the Methods in Enzymology series serial highlights new advances in the field, with this new volume presenting interesting chapters pn a variety of timely topics, including Optimizing purification and activity assays of N-terminal methyltransferase complexes, In vitro reconstitution of hierarchical steps of Arg/N-degron pathway, Identification of N-degrons and N-recognins by using peptide-pull-downs combined with quantitative proteomics, A decoupled Virotrap approach to study the interactomes of N-terminal proteoforms, Monitoring ADO-dependent proteolysis in cells using fluorescent reporter proteins, Site-specific ?-N-terminal methylation on peptides through chemical and enzymatic methods, and more.
Additional sections cover Monitoring the interactions between N-degrons and N-recognins of the Arg/N-degron pathway, Characterization and chemical modulation of p62/SQSTM1 as an autophagic N-recognin of the Arg/N-degron pathway, Analysis of higher plant N-degron pathway components and substrates via expression in S. cerevisiae, and so much more.
Additional sections cover Monitoring the interactions between N-degrons and N-recognins of the Arg/N-degron pathway, Characterization and chemical modulation of p62/SQSTM1 as an autophagic N-recognin of the Arg/N-degron pathway, Analysis of higher plant N-degron pathway components and substrates via expression in S. cerevisiae, and so much more.
More details
Series
Language
English
Place of publication
San Diego
United States
Publishing group
Elsevier Science Publishing Co Inc
Target group
Professional and scholarly
Dimensions
Height: 229 mm
Width: 152 mm
Weight
450 gr
ISBN-13
978-0-443-15772-1 (9780443157721)
Copyright in bibliographic data is held by Nielsen Book Services Limited or its licensors: all rights reserved.
Schweitzer Classification
Other editions
Additional editions

E-Book
05/2023
Academic Press
€142.00
Available for download
Person
Professor Thomas Arnesen received his Ph.D. in molecular biology from the University of Bergen, Norway in 2006. After postdoctoral work at Haukeland University Hospital and University of Rochester Medical Center, he established his own lab at the University of Bergen in 2010. His main interest has been protein N-terminal acetylation and the responsible enzymes, the N-terminal acetyltransferases (NATs). Using Saccharomyces cerevisiae and human cell models combined with in vitro approaches his lab and collaborators have i) identified and defined the presumed complete cytosolic human NAT-machinery including NATs acting post-translationally, ii) quantitatively analysed the N-terminal acetylomes of yeast and human cells, iii) developed novel assays for NAT-profiling, iv) gained mechanistic insights of the molecular and cellular effects of N-terminal acetylation, v) contributed to the understanding of the physiological and clinical importance of NATs by revealing the links between NatA and cancer cell survival and drug sensitisation, and lately by defining genetic disorders caused by pathogenic NAT variants. The Arnesen lab also contributed to solving the first NAT-structures and developing the first potent NAT-inhibitors.
With Fred Sherman and Bogdan Polevoda, Arnesen introduced the NAA (N-alpha acetyltransferase) nomenclature of the N-terminal acetyltransferase genes and proteins, and he acts as the specialist advisor for the HUGO Gene Nomenclature Committee for these genes. Arnesen is one of the founders and council members of the International Society of Protein Termini (ISPT). He has organized several symposia on N-terminal acetylation, and in 2022 he was the head organizer of the EMBO Workshop 'Protein Termini - From mechanism to biological impact' in Bergen, Norway. Arnesen has co-authored more than 100 peer-reviewed publications. Today he is head of the Translational Cell Signaling and Metabolism group at the Dept. of Biomedicine, UiB, supported by the Research Council of Norway and ERC. Here his team continues the basic and translational research to understand the impact of protein N-terminal modifications.
With Fred Sherman and Bogdan Polevoda, Arnesen introduced the NAA (N-alpha acetyltransferase) nomenclature of the N-terminal acetyltransferase genes and proteins, and he acts as the specialist advisor for the HUGO Gene Nomenclature Committee for these genes. Arnesen is one of the founders and council members of the International Society of Protein Termini (ISPT). He has organized several symposia on N-terminal acetylation, and in 2022 he was the head organizer of the EMBO Workshop 'Protein Termini - From mechanism to biological impact' in Bergen, Norway. Arnesen has co-authored more than 100 peer-reviewed publications. Today he is head of the Translational Cell Signaling and Metabolism group at the Dept. of Biomedicine, UiB, supported by the Research Council of Norway and ERC. Here his team continues the basic and translational research to understand the impact of protein N-terminal modifications.
Volume editor
Researcher, Professor, The Department of Biomedicine, Department of Biological Sciences (BIO), Arnesen Lab, University of Bergen, Bergen, Norway
Content
1. Selective ribosome profiling as a tool to study interactions of translating ribosomes in mammalian cells
Bernd Bukau, Jiri Koubek, Manuel Guennigmann and Guenter Kramer
2. Deformylation of nascent chains on the ribosome
Marina V. Rodnina, Lena Boegeholz, Evan Mercier and Wolfgang Wintermeyer
3. Optimizing purification and activity assays of N-terminal methyltransferase complexes
Christine Schaner Tooley, Haley Parker and John Tooley
4. Site-specific ?-N-terminal methylation on peptides through chemical and enzymatic methods
Rong Huang and Ying Meng
5. Biochemical and structural analysis of N-myristoyltransferase-mediated protein tagging
Thierry Meinnel, Carmela Giglione, Paul Monassa, Frederic Riviere, Cyril Dian and Frederic Frottin
6. Kinetic and catalytic features of N-myristoyltransferases
Thierry Meinnel and Carmela Giglione
7. Detecting N-terminal myristoylation using metabolic Alk12 labeling
Hening Lin and Yilai Xu
8. Peptide CoA conjugates for in situ proteomics profiling of acetyltransferase activities
Iris Finkemeier, Juergen Eirich, Julia Sindlinger, Stefan Schoen and Dirk Schwarzer
9. A decoupled Virotrap approach to study the interactomes of N-terminal proteoforms
Kris Gevaert, Annelies Bogaert, Tessa Van de Steene, Marnik Vuylsteke and Sven Eyckerman
10. The amino-dipeptidyl peptidases DPP8 and DPP9: purification, interaction studies and enzymatic assays
Ruth Geiss-Friedlander, Laura Donzelli and Oguz Bolgi
Bernd Bukau, Jiri Koubek, Manuel Guennigmann and Guenter Kramer
2. Deformylation of nascent chains on the ribosome
Marina V. Rodnina, Lena Boegeholz, Evan Mercier and Wolfgang Wintermeyer
3. Optimizing purification and activity assays of N-terminal methyltransferase complexes
Christine Schaner Tooley, Haley Parker and John Tooley
4. Site-specific ?-N-terminal methylation on peptides through chemical and enzymatic methods
Rong Huang and Ying Meng
5. Biochemical and structural analysis of N-myristoyltransferase-mediated protein tagging
Thierry Meinnel, Carmela Giglione, Paul Monassa, Frederic Riviere, Cyril Dian and Frederic Frottin
6. Kinetic and catalytic features of N-myristoyltransferases
Thierry Meinnel and Carmela Giglione
7. Detecting N-terminal myristoylation using metabolic Alk12 labeling
Hening Lin and Yilai Xu
8. Peptide CoA conjugates for in situ proteomics profiling of acetyltransferase activities
Iris Finkemeier, Juergen Eirich, Julia Sindlinger, Stefan Schoen and Dirk Schwarzer
9. A decoupled Virotrap approach to study the interactomes of N-terminal proteoforms
Kris Gevaert, Annelies Bogaert, Tessa Van de Steene, Marnik Vuylsteke and Sven Eyckerman
10. The amino-dipeptidyl peptidases DPP8 and DPP9: purification, interaction studies and enzymatic assays
Ruth Geiss-Friedlander, Laura Donzelli and Oguz Bolgi